Evidence map›Paper›PMID 21383008›Full record

ArticleThe Journal of biological chemistry2011

Crystal structure of Toxoplasma gondii porphobilinogen synthase: insights on octameric structure and porphobilinogen formation.

Eileen K Jaffe, Dhanasekaran Shanmugam, Anna Gardberg, Shellie Dieterich, Banumathi Sankaran, Lance J Stewart, Peter J Myler, David S Roos

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. The SeComputational toxicology (Amsterdam, Netherlands) · 2020
    Article
  4. Article
  5. Vitamin and cofactor acquisition in apicomplexans: SynthesisThe Journal of biological chemistry · 2020
    Review
  6. Review
  7. The Remarkable Character of Porphobilinogen Synthase.Accounts of chemical research · 2016
    Article
  8. Article
  9. Article
  10. Review
  11. Allostery and the dynamic oligomerization of porphobilinogen synthase.Archives of biochemistry and biophysics · 2012
    Review
  12. The search for the missing link: a relic plastid in Perkinsus?International journal for parasitology · 2011
    Review
  13. Structural genomics of infectious disease drug targets: the SSGCID.Acta crystallographica. Section F, Structural biology and crystallization communications · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Eileen K JaffeInstitute for Cancer Research, Fox Chase Cancer Center, Philadelphia, Pennsylvania 19111, USA. eileen.jaffe@fccc.edu
Dhanasekaran Shanmugam
Anna Gardberg
Shellie Dieterich
Banumathi Sankaran
Lance J Stewart
Peter J Myler
David S Roos
Center for Infectious Disease Research · USUniversity of Pennsylvania · USFox Chase Cancer Center · USUniversity of Washington · US

Funding

The Porphobilinogen Synthase FamilyR01ES003654 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI JAFFE, EILEEN K · 1985 to 2012
$3.9M
Low Activity Oligomers of Porphobilinogen Synthase as Antibiotic TargetsR56AI077577 · NIAID · RESEARCH INST OF FOX CHASE CAN CTR · PI JAFFE, EILEEN K · 2009 to 2010
$447k
Howard Hughes Medical InstituteNIAID NIH HHS HHSN272200700057CNIAID NIH HHS R56 AI077577NIAID NIH HHS R56AI077577NIEHS NIH HHS R01 ES003654NIEHS NIH HHS R01ES003654
6 · The paper itself

Abstract

Porphobilinogen synthase (PBGS) is essential for heme biosynthesis, but the enzyme of the protozoan parasite Toxoplasma gondii (TgPBGS) differs from that of its human host in several important respects, including subcellular localization, metal ion dependence, and quaternary structural dynamics. We have solved the crystal structure of TgPBGS, which contains an octamer in the crystallographic asymmetric unit. Crystallized in the presence of substrate, each active site contains one molecule of the product porphobilinogen. Unlike prior structures containing a substrate-derived heterocycle directly bound to an active site zinc ion, the product-bound TgPBGS active site contains neither zinc nor magnesium, placing in question the common notion that all PBGS enzymes require an active site metal ion. Unlike human PBGS, the TgPBGS octamer contains magnesium ions at the intersections between pro-octamer dimers, which are presumed to function in allosteric regulation. TgPBGS includes N- and C-terminal regions that differ considerably from previously solved crystal structures. In particular, the C-terminal extension found in all apicomplexan PBGS enzymes forms an intersubunit β-sheet, stabilizing a pro-octamer dimer and preventing formation of hexamers that can form in human PBGS. The TgPBGS structure suggests strategies for the development of parasite-selective PBGS inhibitors.

Indexed as

Catalytic DomainCrystallography, X-RayHumansMagnesiumModels, MolecularPorphobilinogenPorphobilinogen SynthaseProtein BindingProtein MultimerizationProtein Structure, QuaternaryProtein Structure, SecondaryToxoplasmaMagnesiumPorphobilinogenPorphobilinogen Synthase

Identifiers

PMID21383008
PMCPMC3083160
OpenAlexW2067610043

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.