Evidence map›Paper›PMID 21382338›Full record

ArticleBiochemical and biophysical research communications2011

Targeted impairment of thymidine kinase 2 expression in cells induces mitochondrial DNA depletion and reveals molecular mechanisms of compensation of mitochondrial respiratory activity.

Joan Villarroya, Mari-Carmen Lara, Beatriz Dorado, Marta Garrido, Elena García-Arumí, Anna Meseguer, Michio Hirano, Maya R Vilà

Abstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Joan VillarroyaInstitut de Recerca, Hospital Universitari de la Vall d'Hebron, Barcelona, Spain; Institut de Recerca l'Hospital de la Santa Creu i Sant Pau, Barcelona, Spain. joanvillarroya@gmail.com
Mari-Carmen Lara
Beatriz Dorado
Marta Garrido
Elena García-Arumí
Anna Meseguer
Michio Hirano
Maya R Vilà

Funding

The North American Mitochondrial Disease Consortium (NAMDC)U54NS078059 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HIRANO, MICHIO · 2011 to 2023
$17.5M
REGULATION OF TENSIONP01NS011766 · NINDS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI HIRANO, MICHIO · 1985 to 2007
$9.1M
DEVELOPING A NORTH AMERICAN MITOCHONDRIAL DISEASE CONSORTIUM (NAMDC)RC1NS070232 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI DIMAURO, SALVATORE, HIRANO, MICHIO · 2009 to 2010
$989k
MOLECULAR PATHOGENESIS OF MNGIE SYNDROMER01HD037529 · NICHD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HIRANO, MICHIO · 1999 to 2001
$581k
NINDS NIH HHS P01 NS011766NINDS NIH HHS RC1 NS070232NINDS NIH HHS U54 NS078059
6 · The paper itself

Abstract

The mitochondrial DNA (mtDNA) depletion syndrome comprises a clinically heterogeneous group of diseases characterized by reductions of the mtDNA abundance, without associated point mutations or rearrangements. We have developed the first in vitro model to study of mtDNA depletion due to reduced mitochondrial thymidine kinase 2 gene (TK2) expression in order to understand the molecular mechanisms involved in mtDNA depletion syndrome due to TK2 mutations. Small interfering RNA targeting TK2 mRNA was used to decrease TK2 expression in Ost TK1(-) cells, a cell line devoid of endogenous thymidine kinase 1 (TK1). Stable TK2-deficient cell lines showed a reduction of TK2 levels close to 80%. In quiescent conditions, TK2-deficient cells showed severe mtDNA depletion, also close to 80% the control levels. However, TK2-deficient clones showed increased cytochrome c oxidase activity, higher cytochrome c oxidase subunit I transcript levels and higher subunit II protein expression respect to control cells. No alterations of the deoxynucleotide pools were found, whereas a reduction in the expression of genes involved in nucleoside/nucleotide homeostasis (human equilibrative nucleoside transporter 1, thymidine phosphorylase) and mtDNA maintenance (DNA-polymerase γ, mitochondrial transcription factor A) was observed. Our findings highlight the importance of cellular compensatory mechanisms that enhance the expression of respiratory components to ensure respiratory activity despite profound depletion in mtDNA levels.

Indexed as

Gene ExpressionCell Line, TumorCell RespirationDNA, MitochondrialDNA ReplicationElectron Transport Complex IVGene SilencingGene TargetingHumansMitochondriaMitochondrial DiseasesNucleotidesThymidine KinaseTranscription, GeneticDNA, MitochondrialElectron Transport Complex IVNucleotidesThymidine Kinasethymidine kinase 2

Identifiers

PMID21382338
PMCPMC7586248

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.