Evidence map›Paper›PMID 21379327›Full record

ArticlePLoS computational biology2011

Molecular dynamics simulations of forced unbending of integrin α(v)β₃.

Wei Chen, Jizhong Lou, Jen Hsin, Klaus Schulten, Stephen C Harvey, Cheng Zhu

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 76 citations in OpenAlex.

  1. Article
  2. All-atom simulations reveal distinct pathways for αCellular and molecular life sciences : CMLS · 2026
    Article
  3. Article
  4. Conformational response of αStructure (London, England : 1993) · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Multiscale models of integrins and cellular adhesions.Current opinion in structural biology · 2023
    Review
  9. Review
  10. Targeting integrin pathways: mechanisms and advances in therapy.Signal transduction and targeted therapy · 2023
    Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Wei ChenWoodruff School of Mechanical Engineering, Georgia Institute of Technology, Atlanta, Georgia, United States of America.
Jizhong Lou
Jen Hsin
Klaus Schulten
Stephen C Harvey
Cheng Zhu
Georgia Institute of Technology · USUniversity of Illinois Urbana-Champaign · US

Funding

WHOLE CELL SIMULATIONP41RR005969 · NCRR · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI LUTHEY-SCHULTEN, ZAIDA · 1990 to 2011
$19.8M
Visualizing Single Integrin Conformational Changes on Living CellsR01AI044902 · NIAID · GEORGIA INSTITUTE OF TECHNOLOGY · PI ZHU, CHENG · 2000 to 2016
$5.8M
KINETIC PROPERTIES OF SELECTINSR21AI044902 · NIAID · GEORGIA INSTITUTE OF TECHNOLOGY · PI ZHU, CHENG · 2000 to 2000
$71k
NCRR NIH HHS P41 RR005969NCRR NIH HHS P41-RR05969NIAID NIH HHS AI44902NIAID NIH HHS R01 AI044902NIAID NIH HHS R21 AI044902
6 · The paper itself

Abstract

Integrins may undergo large conformational changes during activation, but the dynamic processes and pathways remain poorly understood. We used molecular dynamics to simulate forced unbending of a complete integrin α(v)β₃ ectodomain in both unliganded and liganded forms. Pulling the head of the integrin readily induced changes in the integrin from a bent to an extended conformation. Pulling at a cyclic RGD ligand bound to the integrin head also extended the integrin, suggesting that force can activate integrins. Interactions at the interfaces between the hybrid and β tail domains and between the hybrid and epidermal growth factor 4 domains formed the major energy barrier along the unbending pathway, which could be overcome spontaneously in ~1 µs to yield a partially-extended conformation that tended to rebend. By comparison, a fully-extended conformation was stable. A newly-formed coordination between the α(v) Asp457 and the α-genu metal ion might contribute to the stability of the fully-extended conformation. These results reveal the dynamic processes and pathways of integrin conformational changes with atomic details and provide new insights into the structural mechanisms of integrin activation.

Indexed as

Molecular Dynamics SimulationHumansIntegrin alphaVbeta3OligopeptidesProtein BindingProtein ConformationProtein StabilityProtein Structure, Tertiaryarginyl-glycyl-aspartic acidIntegrin alphaVbeta3Oligopeptides

Identifiers

PMID21379327
PMCPMC3040657
OpenAlexW2091139254

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.