Evidence map›Paper›PMID 21378190›Full record

ArticleJournal of bacteriology2011

Regulation of type VI secretion gene clusters by sigma54 and cognate enhancer binding proteins.

Christophe S Bernard, Yannick R Brunet, Marthe Gavioli, Roland Lloubès, Eric Cascales

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 91 citations in OpenAlex.

  1. TheMicroorganisms · 2026
    Article
  2. Article
  3. Article
  4. Microbiology (Reading, England) · 2024
    Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Identification of the Genes of the Plant PathogenFrontiers in microbiology · 2022
    Article
  10. Article
  11. Article
  12. Article
  13. VasH Contributes to Virulence ofFrontiers in veterinary science · 2021
    Article
  14. Genomic and Phenotypic Biology of Novel Strains ofFrontiers in plant science · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Christophe S BernardLaboratoire d'Ingénierie des Systèmes Macromoléculaires, Institut de Microbiologie de la Méditerranée, Aix-Marseille Université, CNRS-UPR9027, 31 chemin Joseph Aiguier, 13402 Marseille Cedex 20, France.
Yannick R Brunet
Marthe Gavioli
Roland Lloubès
Eric Cascales
Centre National de la Recherche Scientifique · FRAix-Marseille Université · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Type VI secretion systems (T6SS) are bacteriophage-derived macromolecular machines responsible for the release of at least two proteins in the milieu, which are thought to form an extracellular appendage. Although several T6SS have been shown to be involved in the virulence of animal and plant pathogens, clusters encoding these machines are found in the genomes of most species of gram-negative bacteria, including soil, marine, and environmental isolates. T6SS have been associated with several phenotypes, ranging from virulence to biofilm formation or stress sensing. Their various environmental niches and large diversity of functions are correlated with their broad variety of regulatory mechanisms. Using a bioinformatic approach, we identified several clusters, including those of Vibrio cholerae, Aeromonas hydrophila, Pectobacterium atrosepticum, Pseudomonas aeruginosa, Pseudomonas syringae pv. tomato, and a Marinomonas sp., which possess typical -24/-12 sequences, recognized by the alternate sigma factor sigma 54 (σ(54) or σ(N)). σ(54), which directs the RNA polymerase to these promoters, requires the action of a bacterial enhancer binding protein (bEBP), which binds to cis-acting upstream activating sequences. Putative bEBPs are encoded within the T6SS gene clusters possessing σ(54) boxes. Using in vitro binding experiments and in vivo reporter fusion assays, we showed that the expression of these clusters is dependent on both σ(54) and bEBPs.

Indexed as

Computational BiologyMultigene FamilyBacteriaBacterial ProteinsBase SequenceGene Expression Regulation, BacterialPromoter Regions, GeneticProtein BindingRecombinant ProteinsRNA Polymerase Sigma 54Species SpecificityTranscription, GeneticBacterial ProteinsRecombinant ProteinsRNA Polymerase Sigma 54

Identifiers

PMID21378190
PMCPMC3133059
OpenAlexW2164103296

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.