Evidence map›Paper›PMID 21378123›Full record

ArticleNucleic acids research2011

Structural basis for the binding of IRES RNAs to the head of the ribosomal 40S subunit.

Margarita Muhs, Hiroshi Yamamoto, Jochen Ismer, Hiroaki Takaku, Masayuki Nashimoto, Toshio Uchiumi, Nobuhiko Nakashima, Thorsten Mielke, Peter W Hildebrand, Knud H Nierhaus and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 58 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Margarita MuhsInstitut für Medizinische Physik und Biophysik, Charite - Universitätsmedizin Berlin, Ziegelstrasse 5-9, 10117-Berlin, Germany.
Hiroshi Yamamoto
Jochen Ismer
Hiroaki Takaku
Masayuki Nashimoto
Toshio Uchiumi
Nobuhiko Nakashima
Thorsten Mielke
Peter W Hildebrand
Knud H Nierhaus
Christian M T Spahn
Niigata University of Pharmacy and Applied Life Sciences · JPMax Planck Society · DECharité - Universitätsmedizin Berlin · DEMax Planck Institute for Molecular Genetics · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Some viruses exploit internal initiation for their propagation in the host cell. This type of initiation is facilitated by structured elements (internal ribosome entry site, IRES) upstream of the initiator AUG and requires only a reduced number of canonical initiation factors. An important example are IRES of the virus family Dicistroviridae that bind to the inter-subunit side of the small ribosomal 40S subunit and lead to the formation of elongation-competent 80S ribosomes without the help of any initiation factor. Here, we present a comprehensive functional and structural analysis of eukaryotic-specific ribosomal protein rpS25 in the context of this type of initiation and propose a structural model explaining the essential involvement of rpS25 for hijacking the ribosome.

Indexed as

5' Untranslated RegionsBase SequenceDicistroviridaeModels, MolecularMolecular Sequence DataPeptide Chain Initiation, TranslationalRibosomal ProteinsRibosome Subunits, Small, EukaryoticRNA, ViralSaccharomyces cerevisiaeSaccharomyces cerevisiae Proteins5' Untranslated RegionsRibosomal ProteinsRNA, ViralRPS21A protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID21378123
PMCPMC3130280
OpenAlexW1963663478

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.