Evidence map›Paper›PMID 21378120›Full record

ArticleNucleic acids research2011

Massive production of small RNAs from a non-coding region of Cauliflower mosaic virus in plant defense and viral counter-defense.

Todd Blevins, Rajendran Rajeswaran, Michael Aregger, Basanta K Borah, Mikhail Schepetilnikov, Loïc Baerlocher, Laurent Farinelli, Frederick Meins, Thomas Hohn, Mikhail M Pooggin

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
20.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 166 citations in OpenAlex.

  1. Article
  2. Review
  3. Small RNA mobility and plant virus diseases.Journal of experimental botany · 2026
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  7. The plant siRNA landscape.The Plant cell · 2024
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  19. Article
  20. Review

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Todd BlevinsInstitute of Botany, University of Basel, Schönbeinstrasse 6, 4056 Basel, Switzerland.
Rajendran Rajeswaran
Michael Aregger
Basanta K Borah
Mikhail Schepetilnikov
Loïc Baerlocher
Laurent Farinelli
Frederick Meins
Thomas Hohn
Mikhail M Pooggin
Friedrich Miescher Institute · CHUniversity of Basel · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To successfully infect plants, viruses must counteract small RNA-based host defense responses. During infection of Arabidopsis, Cauliflower mosaic pararetrovirus (CaMV) is transcribed into pregenomic 35S and subgenomic 19S RNAs. The 35S RNA is both reverse transcribed and also used as an mRNA with highly structured 600 nt leader. We found that this leader region is transcribed into long sense- and antisense-RNAs and spawns a massive quantity of 21, 22 and 24 nt viral small RNAs (vsRNAs), comparable to the entire complement of host-encoded small-interfering RNAs and microRNAs. Leader-derived vsRNAs were detected bound to the Argonaute 1 (AGO1) effector protein, unlike vsRNAs from other viral regions. Only negligible amounts of leader-derived vsRNAs were bound to AGO4. Genetic evidence showed that all four Dicer-like (DCL) proteins mediate vsRNA biogenesis, whereas the RNA polymerases Pol IV, Pol V, RDR1, RDR2 and RDR6 are not required for this process. Surprisingly, CaMV titers were not increased in dcl1/2/3/4 quadruple mutants that accumulate only residual amounts of vsRNAs. Ectopic expression of CaMV leader vsRNAs from an attenuated geminivirus led to increased accumulation of this chimeric virus. Thus, massive production of leader-derived vsRNAs does not restrict viral replication but may serve as a decoy diverting the silencing machinery from viral promoter and coding regions.

Indexed as

ArabidopsisArabidopsis ProteinsArgonaute ProteinsCaulimovirusDNA, ViralMutationPlant DiseasesRibonuclease IIIRNA, Small UntranslatedRNA, ViralVirus ReplicationAGO1 protein, ArabidopsisArabidopsis ProteinsArgonaute ProteinsDNA, ViralRibonuclease IIIRNA, Small UntranslatedRNA, Viral

Identifiers

PMID21378120
PMCPMC3130284
OpenAlexW2135721612

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.