Evidence map›Paper›PMID 21376010›Full record

ArticleArchives of biochemistry and biophysics2011

Characterization of Ceriporiopsis subvermispora bicupin oxalate oxidase expressed in Pichia pastoris.

Patricia Moussatche, Alexander Angerhofer, Witcha Imaram, Eric Hoffer, Kelsey Uberto, Christopher Brooks, Crystal Bruce, Daniel Sledge, Nigel G J Richards, Ellen W Moomaw

Abstract read
In one paragraph

Article in Archives of biochemistry and biophysics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.2field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 29 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Patricia MoussatcheDepartment of Chemistry, University of Florida, P.O. Box 117200, Gainesville, FL 32611-7200, USA.
Alexander Angerhofer
Witcha Imaram
Eric Hoffer
Kelsey Uberto
Christopher Brooks
Crystal Bruce
Daniel Sledge
Nigel G J Richards
Ellen W Moomaw
University of Florida · USKennesaw State University · US

Funding

Biochemical Studies of Oxalate DecarboxylaseR01DK061666 · NIDDK · UNIVERSITY OF FLORIDA · PI RICHARDS, NIGEL GORDON · 2003 to 2013
$1.9M
Biochemical Studies of Oxalate DecarboxylaseR56DK061666 · NIDDK · UNIVERSITY OF FLORIDA · PI RICHARDS, NIGEL GORDON · 2008 to 2008
$205k
NIDDK NIH HHS DK061666NIDDK NIH HHS R01 DK061666NIDDK NIH HHS R56 DK061666
6 · The paper itself

Abstract

Oxalate oxidase (E.C. 1.2.3.4) catalyzes the oxygen-dependent oxidation of oxalate to carbon dioxide in a reaction that is coupled with the formation of hydrogen peroxide. Although there is currently no structural information available for oxalate oxidase from Ceriporiopsis subvermispora (CsOxOx), sequence data and homology modeling indicate that it is the first manganese-containing bicupin enzyme identified that catalyzes this reaction. Interestingly, CsOxOx shares greatest sequence homology with bicupin microbial oxalate decarboxylases (OxDC). We show that CsOxOx activity directly correlates with Mn content and other metals do not appear to be able to support catalysis. EPR spectra indicate that the Mn is present as Mn(II), and are consistent with the coordination environment expected from homology modeling with known X-ray crystal structures of OxDC from Bacillus subtilis. EPR spin-trapping experiments support the existence of an oxalate-derived radical species formed during turnover. Acetate and a number of other small molecule carboxylic acids are competitive inhibitors for oxalate in the CsOxOx catalyzed reaction. The pH dependence of this reaction suggests that the dominant contribution to catalysis comes from the monoprotonated form of oxalate binding to a form of the enzyme in which an active site carboxylic acid residue must be unprotonated.

Indexed as

AcetatesCarboxylic AcidsElectron Spin Resonance SpectroscopyGene ExpressionManganeseOxalatesOxidoreductasesPichiaPolyporalesSubstrate SpecificityAcetatesCarboxylic AcidsManganeseoxalate oxidaseOxalatesOxidoreductases

Identifiers

PMID21376010
PMCPMC3078958
OpenAlexW2015260445

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.