ReviewMicrobial biotechnology2011
Oligonucleotide primers, probes and molecular methods for the environmental monitoring of methanogenic archaea.
Review in Microbial biotechnology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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Who cites it
22 citing papers in PubMed, 84 citations in OpenAlex.
- Microbial activity contributes to spatial heterogeneity of wetland methane fluxes.Microbiology spectrum · 2023Article
- Improved Quantitative Real-Time PCR Protocol for Detection and Quantification of Methanogenic Archaea in Stool Samples.Microorganisms · 2023Article
- Understanding the mechanism of polybrominated diphenyl ethers reducing the anaerobic co-digestion efficiency of excess sludge and kitchen waste.Environmental science and pollution research international · 2022Article
- Dietary supplemental plant oils reduce methanogenesis from anaerobic microbial fermentation in the rumen.Scientific reports · 2020Article
- FISH analysis of microbial communities in a full-scale technology for biogas production.Engineering in life sciences · 2018Article
- Estimating Population Turnover Rates by Relative Quantification Methods Reveals Microbial Dynamics in Marine Sediment.Applied and environmental microbiology · 2018Article
- A role for methanogens and methane in the regulation of GLP-1.Endocrinology, diabetes & metabolism · 2018Article
- Machine learning analysis of microbial flow cytometry data from nanoparticles, antibiotics and carbon sources perturbed anaerobic microbiomes.Journal of biological engineering · 2018Article
- Article
- Flow cytometric quantification, sorting and sequencing of methanogenic archaea based on FMicrobial cell factories · 2017Article
- Analysing Microbial Community Composition through Amplicon Sequencing: From Sampling to Hypothesis Testing.Frontiers in microbiology · 2017Review
- Effect of Nickel Levels on Hydrogen Partial Pressure and Methane Production in Methanogens.PloS one · 2016Article
- Article
- Microbial community composition and ultrastructure of granules from a full-scale anammox reactor.Microbial ecology · 2015Article
- Analysis of microbial communities in the oil reservoir subjected to CO2-flooding by using functional genes as molecular biomarkers for microbial CO2 sequestration.Frontiers in microbiology · 2015Article
- Mechanism for stabilizing mRNAs involved in methanol-dependent methanogenesis of cold-adaptive Methanosarcina mazei zm-15.Applied and environmental microbiology · 2014Article
- Analysis of methane-producing and metabolizing archaeal and bacterial communities in sediments of the northern South China Sea and coastal Mai Po Nature Reserve revealed by PCR amplification of mcrA and pmoA genes.Frontiers in microbiology · 2014Article
- Microbial trophic interactions and mcrA gene expression in monitoring of anaerobic digesters.Frontiers in microbiology · 2014Review
- Use of a hierarchical oligonucleotide primer extension approach for multiplexed relative abundance analysis of methanogens in anaerobic digestion systems.Applied and environmental microbiology · 2013Article
- Archaeal diversity in biofilm technologies applied to treat urban and industrial wastewater: recent advances and future prospects.International journal of molecular sciences · 2013Review
Corrections and comments
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Authors and funding
2 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
For the identification and quantification of methanogenic archaea (methanogens) in environmental samples, various oligonucleotide probes/primers targeting phylogenetic markers of methanogens, such as 16S rRNA, 16S rRNA gene and the gene for the α-subunit of methyl coenzyme M reductase (mcrA), have been extensively developed and characterized experimentally. These oligonucleotides were designed to resolve different groups of methanogens at different taxonomic levels, and have been widely used as hybridization probes or polymerase chain reaction primers for membrane hybridization, fluorescence in situ hybridization, rRNA cleavage method, gene cloning, DNA microarray and quantitative polymerase chain reaction for studies in environmental and determinative microbiology. In this review, we present a comprehensive list of such oligonucleotide probes/primers, which enable us to determine methanogen populations in an environment quantitatively and hierarchically, with examples of the practical applications of the probes and primers.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.