Evidence map›Paper›PMID 21375435›Full record

ArticleLeukemia & lymphoma2011

Refining tumor-associated aneuploidy through 'genomic recoding' of recurrent DNA copy number aberrations in 150 canine non-Hodgkin lymphomas.

Rachael Thomas, Eric L Seiser, Alison Motsinger-Reif, Luke Borst, Victor E Valli, Kathryn Kelley, Steven E Suter, David Argyle, Kristine Burgess, Jerold Bell and 3 more

Open access · greenAbstract read
In one paragraph

Article in Leukemia & lymphoma, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 99 citations in OpenAlex.

  1. Trial
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  7. Hypermethylation-Mediated Silencing ofInternational journal of molecular sciences · 2022
    Article
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  18. Epigenetic Mechanisms in Canine Cancer.Frontiers in oncology · 2020
    Review
  19. Article
  20. Genome-wide DNA copy number analysis and targeted transcriptional analysis of canine histiocytic malignancies identifies diagnostic signatures and highlights disruption of spindle assembly complex.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 3 countries.

Rachael ThomasDepartment of Molecular Biomedical Sciences, College of Veterinary Medicine, North Carolina State University, Raleigh, NC 27606, USA.
Eric L Seiser
Alison Motsinger-Reif
Luke Borst
Victor E Valli
Kathryn Kelley
Steven E Suter
David Argyle
Kristine Burgess
Jerold Bell
Kerstin Lindblad-Toh
Jaime F Modiano
Matthew Breen
North Carolina State University · USTufts University · USBroad Institute · USIVDiagnostics (United States) · USUniversity of Edinburgh · GBUniversity of Veterinary Medicine · HU

Funding

SPONTANEOUS CANINE MODELS FOR CANCER GENE DISCOVERYR01CA112211 · NCI · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI BREEN, MATTHEW · 2007 to 2011
$1.4M
NCI NIH HHS R01 CA112211NCI NIH HHS R01CA112211
6 · The paper itself

Abstract

Identification of the genomic regions most intimately associated with non-Hodgkin lymphoma (NHL) pathogenesis is confounded by the genetic heterogeneity of human populations. We hypothesize that the restricted genetic variation of purebred dogs, combined with the contrasting architecture of the human and canine karyotypes, will increase the penetrance of fundamental NHL-associated chromosomal aberrations in both species. We surveyed non-random aneuploidy in 150 canine NHL cases, revealing limited genomic instability compared to their human counterparts and no evidence for CDKN2A/B deletion in canine B-cell NHL. 'Genomic recoding' of canine NHL data into a 'virtual human' chromosome format showed remarkably few regions of copy number aberration (CNA) shared between both species, restricted to regions of dog chromosomes 13 and 31, and human chromosomes 8 and 21. Our data suggest that gene discovery in NHL may be enhanced through comparative studies exploiting the less complex association between CNAs and tumor pathogenesis in canine patients.

Indexed as

AneuploidyGenomicsAnimalsBreedingComparative Genomic HybridizationCyclin-Dependent Kinase Inhibitor p16DNA Copy Number VariationsDogsGene Expression Regulation, NeoplasticImmunophenotypingLymphoma, Non-HodgkinCyclin-Dependent Kinase Inhibitor p16

Identifiers

PMID21375435
PMCPMC4304668
OpenAlexW2096807858

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.