Evidence map›Paper›PMID 21368758›Full record

ArticleNature2011

MHC class II transactivator CIITA is a recurrent gene fusion partner in lymphoid cancers.

Christian Steidl, Sohrab P Shah, Bruce W Woolcock, Lixin Rui, Masahiro Kawahara, Pedro Farinha, Nathalie A Johnson, Yongjun Zhao, Adele Telenius, Susana Ben Neriah and 17 more

Abstract read
In one paragraph

Article in Nature, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 311 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
311citing papers in PubMed, 2 pooled it
27.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

311 citing papers in PubMed, 2 syntheses or guidelines pooled it, 604 citations in OpenAlex.

  1. A genetic profiling guideline to support diagnosis and clinical management of lymphomas.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2024
    Guideline
  2. Efficacy of nivolumab as checkpoint inhibitor drug on survival rate of patients with relapsed/refractory classical Hodgkin lymphoma: a meta-analysis of prospective clinical study.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2019
    Pooled it
  3. Journal for immunotherapy of cancer · 2025
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251 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 6 institutions in 3 countries.

Christian SteidlDepartment of Pathology and Laboratory Medicine, Centre for Lymphoid Cancers and the Centre for Translational and Applied Genomics, Vancouver, British Columbia, V5Z4E6, Canada.
Sohrab P Shah
Bruce W Woolcock
Lixin Rui
Masahiro Kawahara
Pedro Farinha
Nathalie A Johnson
Yongjun Zhao
Adele Telenius
Susana Ben Neriah
Andrew McPherson
Barbara Meissner
Ujunwa C Okoye
Arjan Diepstra
Anke van den Berg
Mark Sun
Gillian Leung
Steven J Jones
Joseph M Connors
David G Huntsman
Kerry J Savage
Lisa M Rimsza
Douglas E Horsman
Louis M Staudt
Ulrich Steidl
Marco A Marra
Randy D Gascoyne
BC Cancer Agency · CAAlbert Einstein College of Medicine · USNational Cancer Institute · USUniversity Medical Center Groningen · NLUniversity of Arizona · USUniversity of British Columbia · CA

Funding

Molecular diagnosis and outcome prediction in lymphomaZIABC011006 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI STAUDT, LOUIS · 2009 to 2025
$21.0M
Oncogenic mechanisms and molecular targets in lymphomaZIABC011008 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI STAUDT, LOUIS · 2009 to 2025
$21.0M
Role of a Novel Homeobox Transcription Factor (HLX) in Acute Myeloid LeukemiaR01CA166429 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI STEIDL, ULRICH · 2013 to 2017
$1.9M
Transcriptional regulation of leukemic stem cells in acute myeloid leukemiaR00CA131503 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI STEIDL, ULRICH · 2009 to 2011
$740k
CIHR 178536NCI NIH HHS R00 CA131503NCI NIH HHS R00CA131503NCI NIH HHS R01 CA166429
6 · The paper itself

Abstract

Chromosomal translocations are critically involved in the molecular pathogenesis of B-cell lymphomas, and highly recurrent and specific rearrangements have defined distinct molecular subtypes linked to unique clinicopathological features. In contrast, several well-characterized lymphoma entities still lack disease-defining translocation events. To identify novel fusion transcripts resulting from translocations, we investigated two Hodgkin lymphoma cell lines by whole-transcriptome paired-end sequencing (RNA-seq). Here we show a highly expressed gene fusion involving the major histocompatibility complex (MHC) class II transactivator CIITA (MHC2TA) in KM-H2 cells. In a subsequent evaluation of 263 B-cell lymphomas, we also demonstrate that genomic CIITA breaks are highly recurrent in primary mediastinal B-cell lymphoma (38%) and classical Hodgkin lymphoma (cHL) (15%). Furthermore, we find that CIITA is a promiscuous partner of various in-frame gene fusions, and we report that CIITA gene alterations impact survival in primary mediastinal B-cell lymphoma (PMBCL). As functional consequences of CIITA gene fusions, we identify downregulation of surface HLA class II expression and overexpression of ligands of the receptor molecule programmed cell death 1 (CD274/PDL1 and CD273/PDL2). These receptor-ligand interactions have been shown to impact anti-tumour immune responses in several cancers, whereas decreased MHC class II expression has been linked to reduced tumour cell immunogenicity. Thus, our findings suggest that recurrent rearrangements of CIITA may represent a novel genetic mechanism underlying tumour-microenvironment interactions across a spectrum of lymphoid cancers.

Indexed as

Antigens, CDB7-1 AntigenB7-H1 AntigenBase SequenceCell Line, TumorChromosome BreakpointsGene Expression ProfilingGene Expression Regulation, NeoplasticHodgkin DiseaseHumansIn Situ Hybridization, FluorescenceJurkat CellsLymphocyte ActivationLymphoma, B-CellMolecular Sequence DataNuclear ProteinsAntigens, CDB7-1 AntigenB7-H1 AntigenCD274 protein, humanMHC class II transactivator proteinNuclear ProteinsOncogene Proteins, FusionPDCD1LG2 protein, humanProgrammed Cell Death 1 Ligand 2 ProteinRNA, NeoplasmTrans-Activators

Identifiers

PMID21368758
PMCPMC3902849
OpenAlexW2163401417

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.