Evidence map›Paper›PMID 21368277›Full record

ArticleGenetics2011

Phylogenetic and functional characterization of the hAT transposon superfamily.

Peter Arensburger, Robert H Hice, Liqin Zhou, Ryan C Smith, Ariane C Tom, Jennifer A Wright, Joshua Knapp, David A O'Brochta, Nancy L Craig, Peter W Atkinson

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
10.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 100 citations in OpenAlex.

  1. Progresses of transposon research inSynthetic and systems biotechnology · 2026
    Review
  2. Article
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  4. Current Non-Viral-Based Strategies to Manufacture CAR-T Cells.International journal of molecular sciences · 2024
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Transposable elements and xenobiotic resistance.Frontiers in insect science · 2023
    Review
  15. Article
  16. Dynamic Transcriptional Landscape of Grass Carp (International journal of molecular sciences · 2022
    Article
  17. Article
  18. Review
  19. Nonviral genome engineering of natural killer cells.Stem cell research & therapy · 2021
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Peter ArensburgerDepartment of Entomology, University of California, Riverside, CA 92521-0001, USA.
Robert H Hice
Liqin Zhou
Ryan C Smith
Ariane C Tom
Jennifer A Wright
Joshua Knapp
David A O'Brochta
Nancy L Craig
Peter W Atkinson
University of California, Riverside · USJohns Hopkins University · USUniversity of Maryland, College Park · US

Funding

HERMES ELEMENT TRANSPOSITION IN MOSQUITOESR01AI045741 · NIAID · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI ATKINSON, PETER WILLIAM · 1999 to 2008
$2.9M
HOBO-LIKE TRANSPOSABLE ELEMENTS IN INSECTSR01GM048102 · NIGMS · UNIVERSITY OF MD BIOTECHNOLOGY INSTITUTE · PI O'BROCHTA, DAVID A · 1992 to 2008
$2.8M
Howard Hughes Medical InstituteNIAID NIH HHS AI45741NIAID NIH HHS R01 AI045741NIGMS NIH HHS GM48102NIGMS NIH HHS R01 GM048102
6 · The paper itself

Abstract

Transposons are found in virtually all organisms and play fundamental roles in genome evolution. They can also acquire new functions in the host organism and some have been developed as incisive genetic tools for transformation and mutagenesis. The hAT transposon superfamily contains members from the plant and animal kingdoms, some of which are active when introduced into new host organisms. We have identified two new active hAT transposons, AeBuster1, from the mosquito Aedes aegypti and TcBuster from the red flour beetle Tribolium castaneum. Activity of both transposons is illustrated by excision and transposition assays performed in Drosophila melanogaster and Ae. aegypti and by in vitro strand transfer assays. These two active insect transposons are more closely related to the Buster sequences identified in humans than they are to the previously identified active hAT transposons, Ac, Tam3, Tol2, hobo, and Hermes. We therefore reexamined the structural and functional relationships of hAT and hAT-like transposase sequences extracted from genome databases and found that the hAT superfamily is divided into at least two families. This division is supported by a difference in target-site selections generated by active transposons of each family. We name these families the Ac and Buster families after the first identified transposon or transposon-like sequence in each. We find that the recently discovered SPIN transposons of mammals are located within the family of Buster elements.

Indexed as

PhylogenyAedesAnimalsBase SequenceColeopteraConserved SequenceDNA FootprintingDNA Transposable ElementsGene DuplicationMammalsMolecular Sequence DataTransposasesDNA Transposable ElementsTransposases

Identifiers

PMID21368277
PMCPMC3120152
OpenAlexW2111840505

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.