Evidence map›Paper›PMID 21362770›Full record

ArticleThe Journal of rheumatology2011

Association study of ITGAM, ITGAX, and CD58 autoimmune risk loci in systemic sclerosis: results from 2 large European Caucasian cohorts.

Baptiste Coustet, Sandeep K Agarwal, Pravitt Gourh, Mickael Guedj, Maureen D Mayes, Philippe Dieude, Julien Wipff, Jerome Avouac, Eric Hachulla, Elisabeth Diot and 12 more

Open access · bronzeAbstract readMulticenter Study
In one paragraph

Article in The Journal of rheumatology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 23 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. CD58 Immunobiology at a Glance.Frontiers in immunology · 2021
    Review
  5. Article
  6. Review
  7. Article
  8. Rare variants at 16p11.2 are associated with common variable immunodeficiency.The Journal of allergy and clinical immunology · 2015
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Genetics of systemic sclerosis: an update.Current rheumatology reports · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 10 institutions in 2 countries.

Baptiste CoustetUniversité Paris Descartes, Rhumatologie A, Hôpital Cochin, APHP, Paris, France.
Sandeep K Agarwal
Pravitt Gourh
Mickael Guedj
Maureen D Mayes
Philippe Dieude
Julien Wipff
Jerome Avouac
Eric Hachulla
Elisabeth Diot
Jean Luc Cracowski
Kiet Tiev
Jean Sibilia
Luc Mouthon
Camille Frances
Zahir Amoura
Patrick Carpentier
Olivier Meyer
Andre Kahan
Catherine Boileau
Frank C Arnett
Yannick Allanore
Université Paris Cité · FRSorbonne Université · FRThe University of Texas Health Science Center at Houston · USInstitut des langues et cultures d'Europe, Amérique, Afrique, Asie et Australie · FRCenter for Rheumatology · USHôpital Bretonneau · FRUniversité de Lille · FRUniversité de Strasbourg · FRUniversité d'Évry Val-d'Essonne · FRUniversité Paris-Saclay · FR

Funding

Role of TGF-beta and CTGF Signaling Transgenic Mouse Models of SclerodermaP50AR054144 · NIAMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI TAN, FILEMON K. · 2006 to 2010
$7.7M
Two-Stage Genome-Wide Association Study in Systemic SclerosisR01AR055258 · NIAMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MAYES, MAUREEN MAUREEN · 2008 to 2012
$5.9M
SCLERODERMA FAMILY REGISTRY AND DNA REPOSITORY-264002251-264002251-264002251N01AR002251 · NIAMS · WAYNE STATE UNIVERSITY · PI MAYES, MAUREEN · 2000 to 2006
$659k
NIAMS NIH HHS 1P50AR054144NIAMS NIH HHS N01 AR002251NIAMS NIH HHS N01-AR-0-2251NIAMS NIH HHS P50 AR054144NIAMS NIH HHS R01 AR055258
6 · The paper itself

Abstract

objectiveAccumulating evidence shows that shared autoimmunity is critical for the pathogenesis of many autoimmune diseases. Systemic sclerosis (SSc) belongs to the connective tissue disorders, and recent data have highlighted strong associations with autoimmunity genes shared with other autoimmune diseases. To determine whether novel risk loci associated with systemic lupus erythematosus or multiple sclerosis may confer susceptibility to SSc, we tested single-nucleotide polymorphisms (SNP) from ITGAM, ITGAX, and CD58 for associations.

methodsSNP harboring associations with autoimmune diseases, ITGAM rs9937837, ITGAX rs11574637, and CD58 rs12044852, were genotyped in 2 independent cohorts of European Caucasian ancestry: 1031 SSc patients and 1014 controls from France and 1038 SSc patients and 691 controls from the USA, providing a combined study population of 3774 individuals. ITGAM rs1143679 was additionally genotyped in the French cohort.

resultsThe 4 polymorphisms were in Hardy-Weinberg equilibrium in the 2 control populations, and allelic frequencies were similar to those expected in European Caucasian populations. Allelic and genotypic frequencies for these 3 SNP were found to be statistically similar in SSc patients and controls. Subphenotype analyses for subgroups having diffuse cutaneous subtype disease, specific autoantibodies, or fibrosing alveolitis did not reveal any difference between SSc patients and controls.

conclusionThese results obtained through 2 large cohorts of SSc patients of European Caucasian ancestry do not support the implication of ITGAM, ITGAX, and CD58 genes in the genetic susceptibility of SSc, although they were recently identified as autoimmune disease risk genes.

Indexed as

Autoimmune DiseasesCase-Control StudiesCD11b AntigenCD11c AntigenCD58 AntigensCohort StudiesData Interpretation, StatisticalFemaleFranceGenetic LociGenetic Predisposition to DiseaseGenotypeHumansMalePhenotypePolymorphism, Single NucleotideCD11b AntigenCD11c AntigenCD58 AntigensITGAM protein, human

Identifiers

PMID21362770
PMCPMC3404507
OpenAlexW2139358125

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.