Evidence map›Paper›PMID 21362624›Full record

ArticleThe Journal of biological chemistry2011

Structure of the M2 transmembrane segment of GLIC, a prokaryotic Cys loop receptor homologue from Gloeobacter violaceus, probed by substituted cysteine accessibility.

Rishi B Parikh, Moez Bali, Myles H Akabas

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
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  7. Review
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  11. Review
  12. Article
  13. Crystal structures of a pentameric ligand-gated ion channel provide a mechanism for activation.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  14. Gating of the proton-gated ion channel from Gloeobacter violaceus at pH 4 as revealed by X-ray crystallography.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  15. Article
  16. Article
  17. Intermediate closed state for glycine receptor function revealed by cysteine cross-linking.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  18. A gating mechanism of pentameric ligand-gated ion channels.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Review
  19. Using molecular dynamics to elucidate the structural basis for function in pLGICs.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Rishi B ParikhDepartment of Physiology & Biophysics, Albert Einstein College of Medicine of Yeshiva University, Bronx, New York 10461, USA.
Moez Bali
Myles H Akabas
Institute of Molecular Biology and Biophysics · RUYeshiva University · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007288 · NIGMS · YESHIVA UNIVERSITY · PI AKABAS, MYLES H. · 1985 to 2022
$35.6M
STRUCTURE OF GABA-A RECEPTOR ANION-SELECTIVE CHANNELR01NS030808 · NINDS · YESHIVA UNIVERSITY · PI AKABAS, MYLES H. · 1994 to 2011
$4.2M
Propofol Interactions with GABA-A ReceptorsR01GM077660 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI AKABAS, MYLES H. · 2006 to 2009
$1.4M
NIGMS NIH HHS GM007288NIGMS NIH HHS GM077660NIGMS NIH HHS R01 GM077660NIGMS NIH HHS T32 GM007288NINDS NIH HHS NS030808NINDS NIH HHS R01 NS030808
6 · The paper itself

Abstract

GLIC is a homopentameric proton-gated, prokaryotic homologue of the Cys loop receptor family of neurotransmitter-gated ion channels. Recently, crystal structures of GLIC hypothesized to represent an open channel state were published. To explore the channel structure in functional GLIC channels, we tested the ability of p-chloromercuribenzenesulfonate to react with 30 individual cysteine substitution mutants in and flanking the M2 channel-lining segment in the closed state (pH 7.5) and in a submaximally activated state (pH 5.0). Nine mutants did not tolerate cysteine substitution and were not functional. From positions 10' to 27', p-chloromercuribenzenesulfonate significantly modified the currents at pH 7.5 and 5.0 in all mutants except H234C (11'), I235C (12'), V241C (18'), T243C (20'), L245C (22'), and Y250C (27'), which were not functional, except for 12'. Currents for P246C (23') and K247C (24') were only significantly altered at pH 5.0. The reaction rates were all >1000 m(-1) s(-1). The reactive residues were more accessible in the activated than in the resting state. We infer that M2 is tightly associated with the adjacent transmembrane helices at the intracellular end but is more loosely packed from 10' to the extracellular end than the x-ray structures suggest. We infer that the charge selectivity filter is in the cytoplasmic half of the channel. We also show that below pH 5.0, GLIC desensitizes on a time scale of minutes and infer that the crystal structures may represent a desensitized state.

Indexed as

4-ChloromercuribenzenesulfonateCrystallography, X-RayCyanobacteriaCysteineHydrogen-Ion ConcentrationIon ChannelsMembrane ProteinsMutationNeurotransmitter AgentsProtein Structure, SecondaryProtein Structure, TertiaryProtonsReceptors, GABAReceptors, NicotinicReceptors, Serotonin, 5-HT34-ChloromercuribenzenesulfonateCysteineIon ChannelsMembrane ProteinsNeurotransmitter AgentsProtonsReceptors, GABAReceptors, NicotinicReceptors, Serotonin, 5-HT3

Identifiers

PMID21362624
PMCPMC3077611
OpenAlexW1988562852

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.