Evidence map›Paper›PMID 21361388›Full record

ArticleBiochemistry2011

Biophysical investigation of the iron in Aft1-1(up) and Gal-YAH1 Saccharomyces cerevisiae.

Ren Miao, Gregory P Holmes-Hampton, Paul A Lindahl

Abstract read
In one paragraph

Article in Biochemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
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  7. Review
  8. Evidence that a respiratory shield inThe Journal of biological chemistry · 2019
    Article
  9. Contribution of Mössbauer spectroscopy to the investigation of Fe/S biogenesis.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2018
    Review
  10. Article
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  16. Review
  17. Article
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  19. Article
  20. The iron metallome in eukaryotic organisms.Metal ions in life sciences · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Ren MiaoDepartment of Chemistry, Texas A&M University, College Station, Texas 77843-3255, United States.
Gregory P Holmes-Hampton
Paul A Lindahl
Texas A&M University · US

Funding

Iron in Mitochondrial Physiology and DiseaseR01GM084266 · NIGMS · TEXAS A&M UNIVERSITY · PI LINDAHL, PAUL A. · 2009 to 2017
$2.3M
NIGMS NIH HHS GM084266NIGMS NIH HHS R01 GM084266
6 · The paper itself

Abstract

Aft1p is a major iron regulator in budding yeast Saccharomyces cerevisiae. It indirectly senses cytosolic Fe status and responds by activating or repressing iron regulon genes. Aft1p within the Aft1-1(up) strain has a single amino acid mutation which causes it to constitutively activate iron regulon genes regardless of cellular Fe status. This leads to elevated Fe uptake under both low and high Fe growth conditions. Ferredoxin Yah1p is involved in Fe/S cluster assembly, and Aft1p-targeted iron regulon genes are also upregulated in Yah1p-depleted cells. In this study Mössbauer, EPR, and UV-vis spectroscopies were used to characterize the Fe distribution in Aft1-1(up) and Yah1p-depleted cells. Aft1-1(up) cells grown in low Fe medium contained more Fe than did WT cells. A basal level of Fe in both WT and Aft1-1(up) cells was located in mitochondria, primarily in the form of Fe/S clusters and heme centers. The additional Fe in Aft1-1(up) cells was present as mononuclear HS Fe(III) species. These species are in a nonmitochondrial location, assumed here to be vacuolar. Aft1-1(up) cells grown in high Fe medium contained far more Fe than found in WT cells. The extra Fe was present as HS Fe(III) ions, probably stored in vacuoles, and as Fe(III) phosphate nanoparticles, located in mitochondria. Yah1p-deficent cells also accumulated nanoparticles in their mitochondria, but they did not contain HS Fe(III) species. Results are interpreted by a proposed model involving three homeostatic regulatory systems, including the Aft1 system, a vacuolar iron regulatory system, and a mitochondrial Fe regulatory system.

Indexed as

AdrenodoxinBiological TransportCeruloplasminChemical PhenomenaElectron Spin Resonance SpectroscopyFMN ReductaseGene Expression Regulation, EnzymologicIronMicrobial ViabilityMitochondriaModels, BiologicalRegulonReverse Transcriptase Polymerase Chain ReactionRNA, MessengerSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAdrenodoxinAFT1 protein, S cerevisiaeCeruloplasminferric citrate iron reductaseFET3 protein, S cerevisiaeFMN ReductaseIronRNA, MessengerSaccharomyces cerevisiae ProteinsTranscription FactorsYAH1 protein, S cerevisiae

Identifiers

PMID21361388
PMCPMC3068216
OpenAlexW2038405260

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.