Evidence map›Paper›PMID 21360289›Full record

ArticleJournal of structural and functional genomics2011

PSI:Biology-materials repository: a biologist's resource for protein expression plasmids.

Catherine Y Cormier, Jin G Park, Michael Fiacco, Jason Steel, Preston Hunter, Jason Kramer, Rajeev Singla, Joshua LaBaer

Abstract read
In one paragraph

Article in Journal of structural and functional genomics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 57 citations in OpenAlex.

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  14. Annotation of proteins of unknown function: initial enzyme results.Journal of structural and functional genomics · 2015
    Article
  15. Anthrax toxin lethal factor domain 3 is highly mobile and responsive to ligand binding.Acta crystallographica. Section D, Biological crystallography · 2014
    Article
  16. Article
  17. Trends in structural coverage of the protein universe and the impact of the Protein Structure Initiative.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  18. The oligomeric state of the active Vps4 AAA ATPase.Journal of molecular biology · 2014
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Catherine Y CormierThe Virginia G. Piper Center for Personalized Diagnostics at the Biodesign Institute at Arizona State University, 1001 S. McAllister Ave, Tempe, AZ, 85287-6401, USA.
Jin G Park
Michael Fiacco
Jason Steel
Preston Hunter
Jason Kramer
Rajeev Singla
Joshua LaBaer
Arizona State University · US

Funding

Development and Implimentation of a Materials Repository for the PSIU01GM079610 · NIGMS · HARVARD MEDICAL SCHOOL · PI LABAER, JOSHUA · 2006 to 2010
$5.8M
NIGMS NIH HHS U01 GM079610
6 · The paper itself

Abstract

The Protein Structure Initiative:Biology-Materials Repository (PSI:Biology-MR; MR; http://psimr.asu.edu ) sequence-verifies, annotates, stores, and distributes the protein expression plasmids and vectors created by the Protein Structure Initiative (PSI). The MR has developed an informatics and sample processing pipeline that manages this process for thousands of samples per month from nearly a dozen PSI centers. DNASU ( http://dnasu.asu.edu ), a freely searchable database, stores the plasmid annotations, which include the full-length sequence, vector information, and associated publications for over 130,000 plasmids created by our laboratory, by the PSI and other consortia, and by individual laboratories for distribution to researchers worldwide. Each plasmid links to external resources, including the PSI Structural Biology Knowledgebase ( http://sbkb.org ), which facilitates cross-referencing of a particular plasmid to additional protein annotations and experimental data. To expedite and simplify plasmid requests, the MR uses an expedited material transfer agreement (EP-MTA) network, where researchers from network institutions can order and receive PSI plasmids without institutional delays. As of March 2011, over 39,000 protein expression plasmids and 78 empty vectors from the PSI are available upon request from DNASU. Overall, the MR's repository of expression-ready plasmids, its automated pipeline, and the rapid process for receiving and distributing these plasmids more effectively allows the research community to dissect the biological function of proteins whose structures have been studied by the PSI.

Indexed as

Biological Specimen BanksGenetic VectorsOnline SystemsPlasmidsAnimalsDatabase Management SystemsDatabases, GeneticHumansProteinsProteins

Identifiers

PMID21360289
PMCPMC3184641
OpenAlexW2047854788

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.