Evidence map›Paper›PMID 21359583›Full record

ArticleMolecular genetics and genomics : MGG2011

Histone H2A.Z acid patch residues required for deposition and function.

Kurt Jensen, Maria Soledad Santisteban, Craig Urekar, M Mitchell Smith

Abstract read
In one paragraph

Article in Molecular genetics and genomics : MGG, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. DNA Repair in Nucleosomes: Insights from Histone Modifications and Mutants.International journal of molecular sciences · 2024
    Review
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  10. Review
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  13. A conserved function for the H2A.Z C terminus.The Journal of biological chemistry · 2012
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Kurt JensenDepartment of Microbiology, University of Virginia Health System, University of Virginia, P.O. Box 800734, Charlottesville, VA 22908-0734, USA. kurt.jensen@neurology.ufl.edu
Maria Soledad Santisteban
Craig Urekar
M Mitchell Smith
University of Virginia Health System · USUniversity of Florida · USUniversity of North Carolina at Pembroke · US

Funding

The Role of MYST Histone Acetyltransferase in Genome StabilityR01GM060444 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI SMITH, M MITCHELL · 2000 to 2013
$3.8M
HISTONE GENE EXPRESSION IN YEASTR01GM028920 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI SMITH, M MITCHELL · 1985 to 2007
$2.7M
The Role of MYST histone acetyltransferases in genome stabilityR56GM060444 · NIGMS · UNIVERSITY OF VIRGINIA · PI SMITH, M MITCHELL · 2008 to 2008
$348k
NIGMS NIH HHS GM28920NIGMS NIH HHS GM60444NIGMS NIH HHS R01 GM028920NIGMS NIH HHS R01 GM060444NIGMS NIH HHS R56 GM060444
6 · The paper itself

Abstract

The incorporation of histone variants is one mechanism used by the eukaryotic cell to alter the generally repressive chromatin template. However, the exact molecular mechanisms that direct this incorporation are not well understood. The SWR1 chromatin remodeling complex that binds to and directs incorporation of histone variant H2A.Z into chromatin has been characterized, but significantly less information is available concerning the requirements on the H2A.Z target molecule. We performed an unbiased mutagenic screen designed to elucidate the function of H2A.Z in Saccharomyces cerevisiae. The screen identified residues within the conserved acidic patch of H2A.Z as being important for the function of the variant. We characterized single point mutations in the patch that are phenotypically sensitive to a variety of growth conditions and are expressed at lower protein levels, but are functionally defective (htz1-D99A, htz1-D99K, and htz1-E101K). The mutants were significantly less detectable by chromatin immunoprecipitation at PHO5, a gene previously described to be enriched for H2A.Z. These results identify acidic patch residues of H2A.Z that are critical for mediating deposition and function in chromatin, and represent potential candidates for the interaction of H2A.Z with its deposition and/or targeting machinery.

Indexed as

Acid PhosphataseAllelesAmino AcidsAmino Acid SequenceAmino Acid SubstitutionChromatin ImmunoprecipitationConserved SequenceGene DosageGenetic TestingHistonesMolecular Sequence DataMutant ProteinsMutationNucleosomesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAcid PhosphataseAmino AcidsHistonesHtz1 protein, S cerevisiaeMutant ProteinsNucleosomesPHO5 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID21359583
PMCPMC3253533
OpenAlexW1975107613

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.