Evidence map›Paper›PMID 21359225›Full record

ArticlePloS one2011

Cooperative adaptation to establishment of a synthetic bacterial mutualism.

Kazufumi Hosoda, Shingo Suzuki, Yoshinori Yamauchi, Yasunori Shiroguchi, Akiko Kashiwagi, Naoaki Ono, Kotaro Mori, Tetsuya Yomo

Abstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
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  9. Article
  10. Fitness and Productivity Increase with Ecotypic Diversity amongApplied and environmental microbiology · 2020
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Synthetic Mutualism and the Intervention Dilemma.Life (Basel, Switzerland) · 2019
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Synthetic transitions: towards a new synthesis.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Kazufumi HosodaDepartment of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University, Suita, Japan.
Shingo Suzuki
Yoshinori Yamauchi
Yasunori Shiroguchi
Akiko Kashiwagi
Naoaki Ono
Kotaro Mori
Tetsuya Yomo

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To understand how two organisms that have not previously been in contact can establish mutualism, it is first necessary to examine temporal changes in their phenotypes during the establishment of mutualism. Instead of tracing back the history of known, well-established, natural mutualisms, we experimentally simulated the development of mutualism using two genetically-engineered auxotrophic strains of Escherichia coli, which mimic two organisms that have never met before but later establish mutualism. In the development of this synthetic mutualism, one strain, approximately 10 hours after meeting the partner strain, started oversupplying a metabolite essential for the partner's growth, eventually leading to the successive growth of both strains. This cooperative phenotype adaptively appeared only after encountering the partner strain but before the growth of the strain itself. By transcriptome analysis, we found that the cooperative phenotype of the strain was not accompanied by the local activation of the biosynthesis and transport of the oversupplied metabolite but rather by the global activation of anabolic metabolism. This study demonstrates that an organism has the potential to adapt its phenotype after the first encounter with another organism to establish mutualism before its extinction. As diverse organisms inevitably encounter each other in nature, this potential would play an important role in the establishment of a nascent mutualism in nature.

Indexed as

Adaptation, PhysiologicalBacteriaBacterial Physiological PhenomenaCoculture TechniquesEscherichia coliIsoleucineLeucineMicrobial InteractionsMicrobiological TechniquesModels, BiologicalOrganisms, Genetically ModifiedSymbiosisIsoleucineLeucine

Identifiers

PMID21359225
PMCPMC3040204

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.