Evidence map›Paper›PMID 21357721›Full record

ArticleInfection and immunity2011

Transcriptome analysis of avian pathogenic Escherichia coli O1 in chicken serum reveals adaptive responses to systemic infection.

Ganwu Li, Kelly A Tivendale, Peng Liu, Yaping Feng, Yvonne Wannemuehler, Wentong Cai, Paul Mangiamele, Timothy J Johnson, Chrystala Constantinidou, Charles W Penn and 1 more

Open access · greenAbstract read
In one paragraph

Article in Infection and immunity, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 65 citations in OpenAlex.

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  6. Pathogenicity and identification of host adaptation genes of the avian pathogenicFrontiers in cellular and infection microbiology · 2024
    Article
  7. Article
  8. Article
  9. Extraintestinal PathogenicPathogens (Basel, Switzerland) · 2021
    Review
  10. Surviving Serum: the Escherichia coliInfection and immunity · 2021
    Article
  11. Article
  12. Article
  13. Frontiers in veterinary science · 2020
    Article
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  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Ganwu LiDepartment of Veterinary Microbiology and Preventive Medicine, College of Veterinary Medicine, Iowa State University, 1802 University Blvd., Ames, IA 50011, USA.
Kelly A Tivendale
Peng Liu
Yaping Feng
Yvonne Wannemuehler
Wentong Cai
Paul Mangiamele
Timothy J Johnson
Chrystala Constantinidou
Charles W Penn
Lisa K Nolan
Iowa State University · USUniversity of Minnesota · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Infections of avian pathogenic Escherichia coli (APEC) result in annual multimillion-dollar losses to the poultry industry. Despite this, little is known about the mechanisms by which APEC survives and grows in the bloodstream. Thus, the aim of this study was to identify molecular mechanisms enabling APEC to survive and grow in this critical host environment. To do so, we compared the transcriptome of APEC O1 during growth in Luria-Bertani broth and chicken serum. Several categories of genes, predicted to contribute to adaptation and growth in the avian host, were identified. These included several known virulence genes and genes involved in adaptive metabolism, protein transport, biosynthesis pathways, stress resistance, and virulence regulation. Several genes with unknown function, which were localized to pathogenicity islands or APEC O1's large virulence plasmid, pAPEC-O1-ColBM, were also identified, suggesting that they too contribute to survival in serum. The significantly upregulated genes dnaK, dnaJ, phoP, and ybtA were subsequently subjected to mutational analysis to confirm their role in conferring a competitive advantage during infection. This genome-wide analysis provides novel insight into processes that are important to the pathogenesis of APEC O1.

Indexed as

AnimalsChickensEscherichia coliEscherichia coli InfectionsGene ExpressionGene Expression ProfilingGene Expression Regulation, BacterialGenes, BacterialGenome-Wide Association StudyIn Situ HybridizationOligonucleotide Array Sequence AnalysisPoultry DiseasesReverse Transcriptase Polymerase Chain ReactionSepsisVirulence

Identifiers

PMID21357721
PMCPMC3088125
OpenAlexW2160735533

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.