Evidence map›Paper›PMID 21357673›Full record

ArticleGenes & development2011

Subnuclear segregation of genes and core promoter factors in myogenesis.

Jie Yao, Richard D Fetter, Ping Hu, Eric Betzig, Robert Tjian

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 92 citations in OpenAlex.

  1. Article
  2. Article
  3. An Optimized Adaptation of DamID for NGS Applications.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  4. Article
  5. Review
  6. Review
  7. The Nuclear Lamina.Cold Spring Harbor perspectives in biology · 2022
    Review
  8. Article
  9. Recent advances in tissue stem cells.Science China. Life sciences · 2021
    Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Jie YaoJanelia Farm Research Campus, The Single Cell Biochemistry Consortium, Howard Hughes Medical Institute, Ashburn, Virginia 20147, USA.
Richard D Fetter
Ping Hu
Eric Betzig
Robert Tjian
Howard Hughes Medical Institute · USUniversity of California, Berkeley · USJanelia Research Campus · US

Funding

THE SV40 TUMOR ANTIGENR37CA025417 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI TJIAN, ROBERT TSE NAN · 1987 to 2013
$6.8M
Howard Hughes Medical InstituteNCI NIH HHS R37 CA025417
6 · The paper itself

Abstract

Recent findings implicate alternate core promoter recognition complexes in regulating cellular differentiation. Here we report a spatial segregation of the alternative core factor TAF3, but not canonical TFIID subunits, away from the nuclear periphery, where the key myogenic gene MyoD is preferentially localized in myoblasts. This segregation is correlated with the differential occupancy of TAF3 versus TFIID at the MyoD promoter. Loss of this segregation by modulating either the intranuclear location of the MyoD gene or TAF3 protein leads to altered TAF3 occupancy at the MyoD promoter. Intriguingly, in differentiated myotubes, the MyoD gene is repositioned to the nuclear interior, where TAF3 resides. The specific high-affinity recognition of H3K4Me3 by the TAF3 PHD (plant homeodomain) finger appears to be required for the sequestration of TAF3 to the nuclear interior. We suggest that intranuclear sequestration of core transcription components and their target genes provides an additional mechanism for promoter selectivity during differentiation.

Indexed as

Promoter Regions, GeneticAnimalsCell DifferentiationCell LineCell NucleusCells, CulturedHomeodomain ProteinsMiceMuscle DevelopmentMyoD ProteinMyogeninProtein TransportTATA-Binding Protein Associated FactorsTranscription FactorsHomeodomain ProteinsMyoD ProteinMyogeninTaf3 protein, mouseTATA-Binding Protein Associated FactorsTranscription Factors

Identifiers

PMID21357673
PMCPMC3059831
OpenAlexW2168261151

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.