Evidence map›Paper›PMID 21355897›Full record

ArticleMolecular microbiology2011

Not too loose, not too tight--just right. Biphasic control of the Tsr HAMP domain.

Michael D Manson

Abstract readComment
PubMed Publisher
In one paragraph

Article in Molecular microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Bacterial chemoreceptors and chemoeffectors.Cellular and molecular life sciences : CMLS · 2015
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

1 author at 1 institution in 1 country.

Michael D MansonDepartment of Biology, Texas A&M University, College Station, TX 77843, USA. mike@bio.tamu.edu
Texas A&M University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

HAMP domains communicate between input and output signalling modules in a wide variety of bacterial sensor proteins. In the Tsr chemoreceptor, they convert a signal initiated by binding of serine to the periplasmic domain of the protein into regulation of receptor control of the CheA kinase, and ultimately of the direction of flagellar rotation. In this issue, Zhou et al. report an extensive mutational analysis of the Tsr HAMP domain that shows that it can assume a number of different signalling states, which presumably correspond to a variety of different conformations. The two conformational extremes of a tightly packed and a loosely packed HAMP four-helix bundle support only low levels of CheA activity. Thus, Tsr HAMP does not function as a simple on-off, two-state device but rather as a dynamic structure with biphasic control. The normal physiological operating range of Tsr is proposed to be at intermediate degrees of packing of the HAMP four-helix bundle, but HAMP domains in other proteins could occupy different portions of the conformational spectrum.

Indexed as

Gene Expression Regulation, BacterialGene Expression Regulation, EnzymologicBacterial ProteinsChemotaxisDNA Mutational AnalysisEscherichia coliFlagellaMembrane ProteinsModels, BiologicalModels, MolecularProtein ConformationProtein Structure, TertiaryBacterial ProteinsMembrane ProteinsTsr protein, Bacteria

Identifiers

PMID21355897
OpenAlexW2147697976

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.