Evidence map›Paper›PMID 21355048›Full record

ArticleHuman molecular genetics2011

Copy number gain at Xp22.31 includes complex duplication rearrangements and recurrent triplications.

Pengfei Liu, Ayelet Erez, Sandesh C Sreenath Nagamani, Weimin Bi, Claudia M B Carvalho, Alexandra D Simmons, Joanna Wiszniewska, Ping Fang, Patricia A Eng, M Lance Cooper and 12 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 86 citations in OpenAlex.

  1. Article
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  5. Article
  6. Genes · 2023
    Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Neurodevelopmental and associated changes in a patient with Xp22.31 duplication.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2020
    Article
  14. Article
  15. Microduplication of Xp22.31 andIranian journal of medical sciences · 2019
    Article
  16. Article
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 6 institutions in 1 country.

Pengfei LiuDepartment of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Room 604B, Houston, TX 77030, USA.
Ayelet Erez
Sandesh C Sreenath Nagamani
Weimin Bi
Claudia M B Carvalho
Alexandra D Simmons
Joanna Wiszniewska
Ping Fang
Patricia A Eng
M Lance Cooper
V Reid Sutton
Elizabeth R Roeder
John B Bodensteiner
Mauricio R Delgado
Siddharth K Prakash
John W Belmont
Pawel Stankiewicz
Jonathan S Berg
Marwan Shinawi
Ankita Patel
Sau Wai Cheung
James R Lupski
Baylor College of Medicine · USSt. Joseph's Hospital and Medical Center · USThe University of Texas Health Science Center at San Antonio · USThe University of Texas Southwestern Medical Center · USUniversity of North Carolina at Chapel Hill · USWashington University in St. Louis · US

Funding

ZOLENDRONIC ACID IN CHILDREN W/ SEVERE OSTEOGENESIS IMPERFECTAM01RR000188 · NCRR · BAYLOR COLLEGE OF MEDICINE · PI SHEARER, WILLIAM THOMAS · 1985 to 2011
$30.6M
UNDERSTANDING FXTAS AMONG MALES WITH THE FMR1 PREMUTATIONP30HD024064 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI TOLIAS, KIMBERLY R · 1988 to 2013
$29.4M
Nonrecurrent rearrangements, genome architecture and neurodegenerative disease.R01NS058529 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI LUPSKI, JAMES R. · 2009 to 2017
$5.0M
Metabolite channeling in the urea cycle and production of nitric oxideK08DK081735 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI EREZ, AYELET · 2009 to 2012
$449k
NCRR NIH HHS M01 RR000188NCRR NIH HHS M01RR00188NICHD NIH HHS P30 HD024064NICHD NIH HHS P30HD024064NIDDK NIH HHS 5K08DK081735NIDDK NIH HHS K08 DK081735NINDS NIH HHS R01 NS058529NINDS NIH HHS R01NS058529
6 · The paper itself

Abstract

Genomic instability is a feature of the human Xp22.31 region wherein deletions are associated with X-linked ichthyosis, mental retardation and attention deficit hyperactivity disorder. A putative homologous recombination hotspot motif is enriched in low copy repeats that mediate recurrent deletion at this locus. To date, few efforts have focused on copy number gain at Xp22.31. However, clinical testing revealed a high incidence of duplication of Xp22.31 in subjects ascertained and referred with neurobehavioral phenotypes. We systematically studied 61 unrelated subjects with rearrangements revealing gain in copy number, using multiple molecular assays. We detected not only the anticipated recurrent and simple nonrecurrent duplications, but also unexpectedly identified recurrent triplications and other complex rearrangements. Breakpoint analyses enabled us to surmise the mechanisms for many of these rearrangements. The clinical significance of the recurrent duplications and triplications were assessed using different approaches. We cannot find any evidence to support pathogenicity of the Xp22.31 duplication. However, our data suggest that the Xp22.31 duplication may serve as a risk factor for abnormal phenotypes. Our findings highlight the need for more robust Xp22.31 triplication detection in that such further gain may be more penetrant than the duplications. Our findings reveal the distribution of different mechanisms for genomic duplication rearrangements at a given locus, and provide insights into aspects of strand exchange events between paralogous sequences in the human genome.

Indexed as

Base SequenceChromosome BreakageChromosome MappingChromosomes, Human, XComparative Genomic HybridizationDNA Copy Number VariationsFemaleGene DuplicationGene OrderGene RearrangementHumansMaleMolecular Sequence DataPhenotypeSegmental Duplications, GenomicSequence Alignment

Identifiers

PMID21355048
PMCPMC3080608
OpenAlexW2107637548

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.