Evidence map›Paper›PMID 21354459›Full record

ArticleHuman immunology2011

Genetic susceptibility to tuberculosis associated with cathepsin Z haplotype in a Ugandan household contact study.

Allison R Baker, Sarah Zalwango, LaShaunda L Malone, Robert P Igo, Feiyou Qiu, Mary Nsereko, Mark D Adams, Pamela Supelak, Harriet Mayanja-Kizza, W Henry Boom and 1 more

Abstract read
In one paragraph

Article in Human immunology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Allison R BakerDepartment of Epidemiology and Biostatistics, Case Western Reserve University, Cleveland, Ohio, USA.
Sarah Zalwango
LaShaunda L Malone
Robert P Igo
Feiyou Qiu
Mary Nsereko
Mark D Adams
Pamela Supelak
Harriet Mayanja-Kizza
W Henry Boom
Catherine M Stein
Case Western Reserve University · USInfectious Diseases Research Collaboration · UGMakerere University · UG

Funding

X-LINKED EXTENSION OF THE REVISED HASEMAN-ELSTON ALGORITHM FOR LINKAGE ANALYSISP41RR003655 · NCRR · LOUISIANA STATE UNIV HSC NEW ORLEANS · PI ELSTON, ROBERT C. · 1987 to 2011
$11.5M
Case Western Reserve University/Cleveland Clinic CTSA (KL2)KL2RR024990 · NCRR · CASE WESTERN RESERVE UNIVERSITY · PI DAVIS, PAMELA B · 2007 to 2011
$9.5M
BIOMETRIC-GENETIC ANALYSIS OF CARDIOVASCULAR DISEASET32HL007567 · NHLBI · LOUISIANA STATE UNIV HSC NEW ORLEANS · PI ZHU, XIAOFENG · 1985 to 2021
$6.0M
Tuberculosis Prevention Research Unit /TBRU/-266095383N01AI095383 · NIAID · CASE WESTERN RESERVE UNIVERSITY · 2000 to 2005
$5.6M
Pathway analysis of tuberculosis pathogenesisR01HL096811 · NHLBI · CASE WESTERN RESERVE UNIVERSITY · PI STEIN, CATHERINE MARIE · 2009 to 2013
$2.2M
ONTOGENY OF FETAL AUTONOMIC CARDIOVASCULAR REGULATIONK08HL000756 · NHLBI · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI LAGAMMA, EDMUND FRANCIS · 1985 to 1985
–
NCRR NIH HHS KL2 RR024990NCRR NIH HHS KL2RR024990NCRR NIH HHS P41 RR003655NCRR NIH HHS RR03655NHLBI NIH HHS R01 HL096811NHLBI NIH HHS R01HL096811NHLBI NIH HHS T32 HL007567NHLBI NIH HHS T32-HL0756NIAID NIH HHS HHSN266200700022C/N01-AI70022NIAID NIH HHS N01 AI070022NIAID NIH HHS N01 AI095383NIAID NIH HHS N01-AI95383
6 · The paper itself

Abstract

Tuberculosis (TB), caused by Mycobacterium tuberculosis (Mtb), causes 9 million new cases worldwide and 2 million deaths annually. Genetic linkage and association analyses have suggested several chromosomal regions and candidate genes involved in TB susceptibility. This study examines the association of TB disease susceptibility with a selection of biologically relevant genes on regions on chromosomes 7 (IL6 and CARD11) and 20 (CTSZ and MC3R) and fine mapping of the chromosome 7p22-p21 region identified through our genome scan. We analyzed 565 individuals from Kampala, Uganda, who were previously included in our genome-wide linkage scan. Association analyses were conducted for 1,417 single-nucleotide polymorphisms (SNP) that passed quality control. None of the candidate gene or fine mapping SNPs was significantly associated with TB susceptibility (p > 0.10). When we restricted the analysis to HIV-negative individuals, 2 SNPs on chromosome 7 were significantly associated with TB susceptibility (p < 0.05). Haplotype analyses identified a significant risk haplotype in cathepsin X (CTSZ; p = 0.0281, odds ratio = 1.5493, 95% confidence interval [1.039, 2.320]).

Indexed as

AdolescentAdultAgedCARD Signaling Adaptor ProteinsCathepsin ZChildChild, PreschoolFemaleGenetic Predisposition to DiseaseGenome-Wide Association StudyGuanylate CyclaseHaplotypesHumansInfantInterleukin-6MaleCARD11 protein, humanCARD Signaling Adaptor ProteinsCathepsin ZGuanylate CyclaseInterleukin-6MC3R protein, humanReceptor, Melanocortin, Type 3

Identifiers

PMID21354459
PMCPMC3078986
OpenAlexW2060754973

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.