Evidence map›Paper›PMID 21354044›Full record

ArticleThe Journal of molecular diagnostics : JMD2011

A highly sensitive genetic protocol to detect NF1 mutations.

María Carmen Valero, Yolanda Martín, Elisabete Hernández-Imaz, Alba Marina Hernández, Germán Meleán, Ana María Valero, Francisco Javier Rodríguez-Álvarez, Dolores Tellería, Concepción Hernández-Chico

Open access · bronzeAbstract readEvaluation Study
In one paragraph

Article in The Journal of molecular diagnostics : JMD, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 117 citations in OpenAlex.

  1. Trial
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  16. Comparison ofInternational journal of genomics · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

María Carmen ValeroMolecular Genetics Unit, University Hospital Ramón y Cajal, Institute of Health Research, IRYCIS, Madrid, Spain.
Yolanda Martín
Elisabete Hernández-Imaz
Alba Marina Hernández
Germán Meleán
Ana María Valero
Francisco Javier Rodríguez-Álvarez
Dolores Tellería
Concepción Hernández-Chico
Centre for Biomedical Network Research on Rare Diseases · ESInstituto Cajal · ESInstituto Ramón y Cajal de Investigación Sanitaria · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Neurofibromatosis type 1 (NF1) is a hereditary disorder caused by mutations in the NF1 gene. Detecting mutation in NF1 is hindered by the gene's large size, the lack of mutation hotspots, the presence of pseudogenes, and the wide variety of possible lesions. We developed a method for detecting germline mutations by combining an original RNA-based cDNA-PCR mutation detection method and denaturing high-performance liquid chromatography (DHPLC) with multiplex ligation-dependent probe amplification (MLPA). The protocol was validated in a cohort of 56 blood samples from NF1 patients who fulfilled NIH diagnostic criteria, identifying the germline mutation in 53 cases (95% sensitivity). The efficiency and reliability of this approach facilitated detection of different types of mutations, including single-base substitutions, deletions or insertions of one to several nucleotides, microdeletions, and changes in intragenic copy number. Because mutational screening for minor lesions was performed using cDNA and the characterization of mutated alleles was performed at both the RNA and genomic DNA level, the analysis provided insight into the nature of the different mutations and their effect on NF1 mRNA splicing. After validation, we implemented the protocol as a routine test. Here we present the overall unbiased spectrum of NF1 mutations identified in 93 patients in a cohort of 105. The results indicate that this protocol is a powerful new tool for the molecular diagnosis of NF1.

Indexed as

Genes, Neurofibromatosis 1Germ-Line MutationChromatography, High Pressure LiquidDNA Copy Number VariationsDNA Mutational AnalysisHumansMolecular Diagnostic TechniquesNeurofibromatosis 1Polymerase Chain ReactionReproducibility of ResultsSensitivity and Specificity

Identifiers

PMID21354044
PMCPMC3128626
OpenAlexW2094770792

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.