Evidence map›Paper›PMID 21349090›Full record

ReviewImmunological reviews2011

A systems biological view of intracellular pathogens.

Daniel P Beiting, David S Roos

Abstract readReview
In one paragraph

Review in Immunological reviews, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Metabolomics in the fight against malaria.Memorias do Instituto Oswaldo Cruz · 2014
    Review
  6. Bugs in the system.Immunological reviews · 2013
    Review
  7. Review
  8. Article
  9. Article
  10. Systems analysis of host-parasite interactions.Wiley interdisciplinary reviews. Systems biology and medicine
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Daniel P BeitingDepartment of Biology, Penn Genome Frontiers Institute, University of Pennsylvania, Philadelphia, PA 19104, USA.
David S Roos

Funding

GENETIC DISSECTION OF TOXOPLASMA GONDIIR37AI028724 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ROOS, DAVID S. · 1999 to 2008
$4.3M
CD8+ T cell memory and mucosal immunity to Toxoplamsa gondiiF32AI075846 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI BEITING, DANIEL PATRICK · 2008 to 2010
$149k
FOLATE METABOLISM AND DRUG RESISTANCE IN TOXOPLASMAR01AI028724 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ROOS, DAVID S. · 1989 to 1997
–
NIAID NIH HHS AI028724NIAID NIH HHS AI075846NIAID NIH HHS F32 AI075846NIAID NIH HHS R37 AI028724
6 · The paper itself

Abstract

As biomedical research becomes increasingly data-intensive, it is increasingly essential to integrate genomic-scale datasets, so as to generate a more holistic picture of complex biological processes. The systems biology paradigm may differ in strategy from traditional reductionist scientific methods, but the goal remains the same: to generate tenable hypotheses driving the experimental elucidation of biological mechanisms. Intracellular pathogens provide an excellent opportunity for systems analysis, as many of these organisms are amenable to genetic manipulation, allowing their biology to be played off against that of the host. Moreover, many of the most fundamental biological properties of these microbes (host cell invasion, immune evasion, intracellular replication, long-term persistence) are directly linked to pathogenesis and readily quantifiable using genomic-scale technologies. In this review, we summarize and discuss some of the available and foreseeable functional genomics datasets pertaining to host-pathogen interactions and suggest that the host-pathogen interface represents a promising, tractable challenge for systems biological analysis. Success will require developing and leveraging new technologies, expanding data acquisition, and increasing public access to comprehensive datasets, to assemble quantitative and testable models of the host-pathogen relationship.

Indexed as

Host-Pathogen InteractionsSystems BiologyArchaeaBacteriaEukaryotaHumansProtein Array Analysis

Identifiers

PMID21349090
PMCPMC3065973

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.