Evidence map›Paper›PMID 21348451›Full record

ArticleBiochemistry2011

Impact of autosomal recessive juvenile Parkinson's disease mutations on the structure and interactions of the parkin ubiquitin-like domain.

Susan S Safadi, Kathryn R Barber, Gary S Shaw

Abstract read
In one paragraph

Article in Biochemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 28 citations in OpenAlex.

  1. Trial
  2. Activation of parkin by a molecular glue.Nature communications · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Specificity and disease in the ubiquitin system.Biochemical Society transactions · 2016
    Review
  10. Article
  11. Article
  12. Article
  13. Protein recycling pathways in neurodegenerative diseases.Alzheimer's research & therapy · 2014
    Review
  14. Article
  15. Solution structure of the E3 ligase HOIL-1 Ubl domain.Protein science : a publication of the Protein Society · 2012
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Susan S SafadiDepartment of Biochemistry, The University of Western Ontario, London, Ontario, Canada N6A 5C1.
Kathryn R Barber
Gary S Shaw
Western University · CA

Funding

Canadian Institutes of Health Research FRN 14606Canadian Institutes of Health Research FRN 80148
6 · The paper itself

Abstract

Autosomal recessive juvenile parkinsonism (ARJP) is an early onset familial form of Parkinson's disease. Approximately 50% of all ARJP cases are attributed to mutations in the gene park2, coding for the protein parkin. Parkin is a multidomain E3 ubiquitin ligase with six distinct domains including an N-terminal ubiquitin-like (Ubl) domain. In this work we examined the structure, stability, and interactions of the parkin Ubl domain containing most ARJP causative mutations. Using NMR spectroscopy we show that the Ubl domain proteins containing the ARJP substitutions G12R, D18N, K32T, R33Q, P37L, and K48A retained a similar three-dimensional fold as the Ubl domain, while at least one other (V15M) had altered packing. Four substitutions (A31D, R42P, A46P, and V56E) result in poor folding of the domain, while one protein (T55I) showed evidence of heterogeneity and aggregation. Further, of the substitutions that maintained their three-dimensional fold, we found that four of these (V15M, K32T, R33Q, and P37L) lead to impaired function due to decreased ability to interact with the 19S regulatory subunit S5a. Three substitutions (G12R, D18N, and Q34R) with an uncertain role in the disease did not alter the three-dimensional fold or S5a interaction. This work provides the first extensive characterization of the structural effects of causative mutations within the ubiquitin-like domain in ARJP.

Indexed as

Amino Acid SubstitutionProtein Interaction Domains and MotifsCircular DichroismHumansKineticsMutant ProteinsNuclear Magnetic Resonance, BiomolecularParkinsonian DisordersProteasome Endopeptidase ComplexProtein DenaturationProtein RefoldingProtein StabilityProtein Structure, TertiaryProtein UnfoldingRecombinant ProteinsRNA-Binding ProteinsMutant Proteinsparkin proteinProteasome Endopeptidase ComplexPSMD4 protein, humanRecombinant ProteinsRNA-Binding ProteinsRNA, RibosomalRNA, ribosomal, 19SUbiquitin-Protein Ligases

Identifiers

PMID21348451
PMCPMC3065874
OpenAlexW2028166413

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.