ArticleAMIA ... Annual Symposium proceedings. AMIA Symposium2010
Leveraging biomedical ontologies and annotation services to organize microbiome data from Mammalian hosts.
Article in AMIA ... Annual Symposium proceedings. AMIA Symposium, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
9 citing papers in PubMed, 14 citations in OpenAlex.
- GenBank as a source to monitor and analyze Host-Microbiome data.Bioinformatics (Oxford, England) · 2022Article
- SIFR annotator: ontology-based semantic annotation of French biomedical text and clinical notes.BMC bioinformatics · 2018Article
- GeoBoost: accelerating research involving the geospatial metadata of virus GenBank records.Bioinformatics (Oxford, England) · 2018Article
- Named entity linking of geospatial and host metadata in GenBank for advancing biomedical research.Database : the journal of biological databases and curation · 2017Article
- A high-precision rule-based extraction system for expanding geospatial metadata in GenBank records.Journal of the American Medical Informatics Association : JAMIA · 2016Article
- NCBO Resource Index: Ontology-Based Search and Mining of Biomedical Resources.Web semantics (Online) · 2011Article
- Towards Structuring Unstructured GenBank Metadata for Enhancing Comparative Biological Studies.AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science · 2011Article
- Leveraging biodiversity knowledge for potential phyto-therapeutic applications.Journal of the American Medical Informatics Association : JAMIAArticle
- The National Center for Biomedical Ontology.Journal of the American Medical Informatics Association : JAMIAArticle
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
1 author at 1 institution in 1 country.
Funding
Abstract
A better understanding of commensal microbiotic communities ("microbiomes") may provide valuable insights to human health. Towards this goal, an essential step may be the development of approaches to organize data that can enable comparative hypotheses across mammalian microbiomes. The present study explores the feasibility of using existing biomedical informatics resources - especially focusing on those available at the National Center for Biomedical Ontology - to organize microbiome data contained within large sequence repositories, such as GenBank. The results indicate that the Foundational Model of Anatomy and SNOMED CT can be used to organize greater than 90% of the bacterial organisms associated with 10 domesticated mammalian species. The promising findings suggest that the current biomedical informatics infrastructure may be used towards the organizing of microbiome data beyond humans. Furthermore, the results identify key concepts that might be organized into a semantic structure for incorporation into subsequent annotations that could facilitate comparative biomedical hypotheses pertaining to human health.
Indexed as
Identifiers
21347072PMC3041364W2140291614What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.