Evidence map›Paper›PMID 21345178›Full record

ArticleBMC microbiology2011

Phenotypic and transcriptional analysis of the osmotic regulator OmpR in Yersinia pestis.

He Gao, Yiquan Zhang, Yanping Han, Lin Yang, Xia Liu, Zhaobiao Guo, Yafang Tan, Xinxiang Huang, Dongsheng Zhou, Ruifu Yang

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
  2. Article
  3. Propionylation of Fis K32 inFuture microbiology · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Draft Genome Sequence ofCurrent genomics · 2023
    Article
  9. Review
  10. Article
  11. Review
  12. The Regulator OmpR inInternational journal of molecular sciences · 2021
    Article
  13. Article
  14. Article
  15. Article
  16. Urease Expression in PathogenicFrontiers in microbiology · 2020
    Article
  17. Article
  18. Article
  19. Review
  20. Functional and Proteomic Analysis ofFrontiers in microbiology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

He GaoState Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing 100071, PR China.
Yiquan Zhang
Yanping Han
Lin Yang
Xia Liu
Zhaobiao Guo
Yafang Tan
Xinxiang Huang
Dongsheng Zhou
Ruifu Yang
Institute of Microbiology · CNJiangsu University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe osmotic regulator OmpR in Escherichia coli regulates differentially the expression of major porin proteins OmpF and OmpC. In Yersinia enterocolitica and Y. pseudotuberculosis, OmpR is required for both virulence and survival within macrophages. However, the phenotypic and regulatory roles of OmpR in Y. pestis are not yet fully understood.

resultsY. pestis OmpR is involved in building resistance against phagocytosis and controls the adaptation to various stressful conditions met in macrophages. The ompR mutation likely did not affect the virulence of Y. pestis strain 201 that was a human-avirulent enzootic strain. The microarray-based comparative transcriptome analysis disclosed a set of 224 genes whose expressions were affected by the ompR mutation, indicating the global regulatory role of OmpR in Y. pestis. Real-time RT-PCR or lacZ fusion reporter assay further validated 16 OmpR-dependent genes, for which OmpR consensus-like sequences were found within their upstream DNA regions. ompC, F, X, and R were up-regulated dramatically with the increase of medium osmolarity, which was mediated by OmpR occupying the target promoter regions in a tandem manner.

conclusionOmpR contributes to the resistance against phagocytosis or survival within macrophages, which is conserved in the pathogenic yersiniae. Y. pestis OmpR regulates ompC, F, X, and R directly through OmpR-promoter DNA association. There is an inducible expressions of the pore-forming proteins OmpF, C, and × at high osmolarity in Y. pestis, in contrast to the reciprocal regulation of them in E. coli. The main difference is that ompF expression is not repressed at high osmolarity in Y. pestis, which is likely due to the absence of a promoter-distal OmpR-binding site for ompF.

Indexed as

Genes, RegulatorAnimalsBacterial ProteinsCell LineDNA, BacterialGene Expression ProfilingGene Expression Regulation, BacterialGenes, BacterialMacrophagesMiceMutationOligonucleotide Array Sequence AnalysisPhagocytosisPhenotypePromoter Regions, GeneticReverse Transcriptase Polymerase Chain ReactionBacterial ProteinsDNA, Bacterialosmolarity response regulator proteinsTrans-Activators

Identifiers

PMID21345178
PMCPMC3050692
OpenAlexW1995752685

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.