Evidence map›Paper›PMID 21343446›Full record

ArticleAntimicrobial agents and chemotherapy2011

Comparative genome sequencing of an isogenic pair of USA800 clinical methicillin-resistant Staphylococcus aureus isolates obtained before and after daptomycin treatment failure.

Susan Boyle-Vavra, Marcus Jones, Brett L Gourley, Michael Holmes, Rebecca Ruf, Ashley R Balsam, David R Boulware, Susan Kline, Selina Jawahir, Aaron Devries and 2 more

Open access · greenAbstract readCase Reports
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 67 citations in OpenAlex.

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  16. Effect of a Point Mutation inFrontiers in microbiology · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Susan Boyle-VavraDepartment of Pediatrics, University of Chicago, KCBD 4152, 900 E 57th Street, Chicago, IL 60657, USA. sboyleva@uchicago.edu
Marcus Jones
Brett L Gourley
Michael Holmes
Rebecca Ruf
Ashley R Balsam
David R Boulware
Susan Kline
Selina Jawahir
Aaron Devries
Scott N Peterson
Robert S Daum
University of Minnesota · USJ. Craig Venter Institute · USUniversity of Chicago · USMinnesota Department of Health · US

Funding

Role of Signal Transduction in Resistance to Cell-Wall Antimicrobials in MRSAR56AI040481 · NIAID · UNIVERSITY OF CHICAGO · PI BOYLE-VAVRA, SUSAN, DAUM, ROBERT S. · 2009 to 2010
$765k
Immune Reconstitution Syndrome in HIV infected Persons in Resource-Limited AreasK23AI073192 · NIAID · UNIVERSITY OF MINNESOTA · PI BOULWARE, DAVID R · 2009 to 2012
$530k
NIAID NIH HHS K23 AI073192NIAID NIH HHS K23AI073192NIAID NIH HHS L30 AI066779NIAID NIH HHS L30AI066779NIAID NIH HHS N01 AI015447NIAID NIH HHS R56 AI040481
6 · The paper itself

Abstract

We describe here a clinical daptomycin treatment failure in a patient with recurrent methicillin-resistant Staphylococcus aureus (MRSA) bacteremia in whom daptomycin was administered after a failed empirical treatment course with vancomycin and piperacillin-tazobactam. We had the opportunity to compare the genome sequences of an isogenic pair of daptomycin-susceptible and -resistant MRSA isolates obtained before and after initiation of daptomycin therapy, respectively. The genotype of both isolates was USA800, ST5, SCCmec type IV, agr type II. There was no increase in cell wall thickness in the daptomycin-resistant strain despite having decreased susceptibility to both vancomycin and daptomycin. By comparing the genome sequences by pyrosequencing, we identified a polymorphism (S337L) in the tenth transmembrane segment of the multiple peptide resistance factor, MprF, encoding lysyl phosphatidylglycerol transferase. This enzyme has been shown previously to promote repulsion of daptomycin at the cell surface by addition of positively charged lysine to phosphatidylglycerol. Also, the hlb open reading frame (ORF) encoding the β-toxin was interrupted by a prophage in the daptomycin-susceptible strain; this phage was missing in the daptomycin-resistant isolate and the hlb ORF was restored. Loss of the phage in the resistant isolate also resulted in loss of the virulence factor genes clpP, scn, and sak. This is the first study to use pyrosequencing to compare the genomes of a daptomycin-susceptible/resistant MRSA isolate pair obtained during failed daptomycin therapy in humans.

Indexed as

Anti-Bacterial AgentsDaptomycinDrug Resistance, BacterialGenotypeHumansMaleMethicillin-Resistant Staphylococcus aureusMicroscopy, Electron, TransmissionMiddle AgedOligonucleotide Array Sequence AnalysisTreatment FailureVancomycinAnti-Bacterial AgentsDaptomycinVancomycin

Identifiers

PMID21343446
PMCPMC3088213
OpenAlexW2126796681

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.