Evidence map›Paper›PMID 21340036›Full record

ArticlePloS one2011

Application of GFAT as a novel selection marker to mediate gene expression.

Guogan Wu, Yu Sun, Wei Qu, Ying Huang, Ling Lu, Lun Li, Weilan Shao

Open access · goldAbstract readEvaluation Study
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
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  7. Accessing the inaccessible: molecular tools for bifidobacteria.Applied and environmental microbiology · 2012
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Guogan WuResearch Center for Biotechnology and Biomass Energy, Nanjing Normal University, Nanjing, People's Republic of China.
Yu Sun
Wei Qu
Ying Huang
Ling Lu
Lun Li
Weilan Shao
Nanjing Normal University · CNUniversity of Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The enzyme glutamine: fructose-6-phosphate aminotransferase (GFAT), also known as glucosamine synthase (GlmS), catalyzes the formation of glucosamine-6-phosphate from fructose-6-phosphate and is the first and rate-limiting enzyme of the hexosamine biosynthetic pathway. For the first time, the GFAT gene was proven to possess a function as an effective selection marker for genetically modified (GM) microorganisms. This was shown by construction and analysis of two GFAT deficient strains, E. coli ΔglmS and S. pombe Δgfa1, and the ability of the GFAT encoding gene to mediate plasmid selection. The gfa1 gene of the fission yeast Schizosaccharomyces pombe was deleted by KanMX6-mediated gene disruption and the Cre-loxP marker removal system, and the glmS gene of Escherichia coli was deleted by using λ-Red mediated recombinase system. Both E. coli ΔglmS and S. pombe Δgfa1 could not grow normally in the media without addition of glucosamine. However, the deficiency was complemented by transforming the plasmids that expressed GFAT genes. The xylanase encoding gene, xynA2 from Thermomyces lanuginosus was successfully expressed and secreted by using GFAT as selection marker in S. pombe. Optimal glucosamine concentration for E. coli ΔglmS and S. pombe Δgfa1 growth was determined respectively. These findings provide an effective technique for the construction of GM bacteria without an antibiotic resistant marker, and the construction of GM yeasts to be applied to complex media.

Indexed as

Gene ExpressionSelection, GeneticBacterial ProteinsBiomarkersDose-Response Relationship, DrugEndo-1,4-beta XylanasesEscherichia coli K12Gene DeletionGene Expression Regulation, BacterialGene Expression Regulation, EnzymologicGene Expression Regulation, FungalGene Knockout TechniquesGenetic Complementation TestGlucosamineGlutamine-Fructose-6-Phosphate Transaminase (Isomerizing)Models, BiologicalBacterial ProteinsBiomarkerscomponent S, glutamate mutase protein, BacteriaEndo-1,4-beta XylanasesGlucosamineGlutamine-Fructose-6-Phosphate Transaminase (Isomerizing)

Identifiers

PMID21340036
PMCPMC3038931
OpenAlexW2024843795

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.