Evidence map›Paper›PMID 21338516›Full record

ArticleBMC microbiology2011

Role of a Fur homolog in iron metabolism in Nitrosomonas europaea.

Neeraja Vajrala, Luis A Sayavedra-Soto, Peter J Bottomley, Daniel J Arp

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Transcriptomic Response of the Diazotrophic BacteriaInternational journal of molecular sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Neeraja VajralaDepartment of Botany and Plant Pathology, 2082 Cordley, Oregon State University, Corvallis, OR 97331, USA.
Luis A Sayavedra-Soto
Peter J Bottomley
Daniel J Arp
Oregon State University · US

Funding

NIDCR NIH HHS DE-FG03-01ER63149
6 · The paper itself

Abstract

backgroundIn response to environmental iron concentrations, many bacteria coordinately regulate transcription of genes involved in iron acquisition via the ferric uptake regulation (Fur) system. The genome of Nitrosomonas europaea, an ammonia-oxidizing bacterium, carries three genes (NE0616, NE0730 and NE1722) encoding proteins belonging to Fur family.

resultsOf the three N. europaea fur homologs, only the Fur homolog encoded by gene NE0616 complemented the Escherichia coli H1780 fur mutant. A N. europaea fur:kanP mutant strain was created by insertion of kanamycin-resistance cassette in the promoter region of NE0616 fur homolog. The total cellular iron contents of the fur:kanP mutant strain increased by 1.5-fold compared to wild type when grown in Fe-replete media. Relative to the wild type, the fur:kanP mutant exhibited increased sensitivity to iron at or above 500 μM concentrations. Unlike the wild type, the fur:kanP mutant was capable of utilizing iron-bound ferrioxamine without any lag phase and showed over expression of several outer membrane TonB-dependent receptor proteins irrespective of Fe availability.

conclusionsOur studies have clearly indicated a role in Fe regulation by the Fur protein encoded by N. europaea NE0616 gene. Additional studies are required to fully delineate role of this fur homolog.

Indexed as

Amino Acid SequenceBacterial ProteinsBinding SitesCloning, MolecularDeferoxamineDNA, BacterialFerric CompoundsGene Expression Regulation, BacterialGene Knockout TechniquesGenetic Complementation TestIronMolecular Sequence DataMutagenesis, InsertionalMutationNitrosomonas europaeaPhylogenyBacterial ProteinsDeferoxamineDNA, BacterialFerric Compoundsferric uptake regulating proteins, bacterialferrioxamine BIronRepressor ProteinsSiderophores

Identifiers

PMID21338516
PMCPMC3050691
OpenAlexW2033967878

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.