Evidence map›Paper›PMID 21338080›Full record

ArticleBiochemistry2011

Normal modes of prion proteins: from native to infectious particle.

Abraham O Samson, Michael Levitt

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 2 countries.

Abraham O SamsonDepartment of Structural Biology, Stanford University, Stanford, California 94305, United States. avraham.samson@stanford.edu
Michael Levitt
Stanford University · US

Funding

Center for Protein Folding Machinery (RMI)PN2EY016525 · NEI · BAYLOR COLLEGE OF MEDICINE · PI CHIU, WAH · 2005 to 2015
$33.6M
Simulation and Prediction of Protein FoldingR37GM041455 · NIGMS · STANFORD UNIVERSITY · PI LEVITT, MICHAEL · 2002 to 2012
$2.8M
SIMULATION OF PROTEIN UNFOLDING AND FOLDINGR01GM041455 · NIGMS · STANFORD UNIVERSITY · PI LEVITT, MICHAEL · 1989 to 2001
$361k
NEI NIH HHS PN2 EY016525NIGMS NIH HHS GM41455NIGMS NIH HHS R01 GM041455NIGMS NIH HHS R37 GM041455
6 · The paper itself

Abstract

Prion proteins (PrP) are the infectious agent in transmissible spongiform encephalopathies (i.e., mad cow disease). To be infectious, prion proteins must undergo a conformational change involving a decrease in α-helical content along with an increase in β-strand content. This conformational change was evaluated by means of elastic normal modes. Elastic normal modes show a diminution of two α-helices by one and two residues, as well as an extension of two β-strands by three residues each, which could instigate the conformational change. The conformational change occurs in a region that is compatible with immunological studies, and it is observed more frequently in mutant prions that are prone to conversion than in wild-type prions because of differences in their starting structures, which are amplified through normal modes. These findings are valuable for our comprehension of the conversion mechanism associated with the conformational change in prion proteins.

Indexed as

Amino Acid SequenceAnimalsHumansModels, MolecularMolecular Sequence DataPrionsProtein Structure, SecondaryScrapiePrions

Identifiers

PMID21338080
PMCPMC3070235
OpenAlexW2084226882

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.