Evidence map›Paper›PMID 21335458›Full record

ArticleJournal of bacteriology2011

Elucidation of the regulon and cis-acting regulatory element of HrpB, the AraC-type regulator of a plant pathogen-like type III secretion system in Burkholderia pseudomallei.

Lyla Lipscomb, Mark A Schell

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. OnfD, an AraC-Type Transcriptional Regulator Encoded byApplied and environmental microbiology · 2020
    Article
  6. Article
  7. Article
  8. Type III Secretion in the Melioidosis PathogenFrontiers in cellular and infection microbiology · 2017
    Review
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Lyla LipscombDepartment of Microbiology, University of Georgia, Athens, GA 30632, USA.
Mark A Schell
University of Georgia · US

Funding

Extracellular Proteins in Virulence of B. (pseudo)malleiR21AI069081 · NIAID · UNIVERSITY OF GEORGIA · PI SCHELL, MARK A · 2006 to 2007
$388k
NIAID NIH HHS R21 AI069081NIAID NIH HHS R21-AI069081
6 · The paper itself

Abstract

The human pathogen Burkholderia pseudomallei possesses multiple type III secretion system (T3SS) gene clusters. One of these, the B. pseudomallei T3SS2 (T3SS2(bp)) gene cluster, which apparently plays no role in animal virulence, is also found in six additional Burkholderia spp. and is very similar to T3SSs found in phytopathogenic Xanthomonas spp. and Ralstonia solanacearum. The T3SS2(bp) gene cluster also encodes an AraC-type regulatory protein (HrpB(bp)) that is an ortholog of HrpB, the master regulator of the R. solanacearum T3SS (T3SS(rso)) and its secreted effectors. Transcriptome analysis showed that HrpB(bp) activates the expression of T3SS2(bp) genes, as well as their orthologs in R. solanacearum. In addition to activating T3SS2(bp), HrpB(bp) also upregulates the expression of ~30 additional B. pseudomallei genes, including some that may confer production of adhesive pili, a polyketide toxin, several putative T3SS2(bp)-secreted effectors, and components of a regulatory cascade. T3SS2(bp) promoter regions were found to contain a conserved DNA motif (p2(bp) box) identical in sequence and position to the hrp(II) box required for HrpB-dependent T3SS(rso) transcription activation. The p2(bp) box is also present in the promoter regions of the essentially identical T3SS found in the very closely related species Burkholderia thailandensis (T3SS2(bt)). Analysis of p2(bp) box mutants showed that it is essential for HrpB(bp)-mediated transcription activation in both species. Although it has been suggested that T3SS2(bp) and T3SS2(bt) may function in phytopathogenicity, we were unable to demonstrate a phytopathogenic phenotype for B. thailandensis in three different plant hosts.

Indexed as

Gene Expression Regulation, BacterialBase SequenceBinding SitesBurkholderia pseudomalleiCluster AnalysisConserved SequenceDNA, BacterialGene Expression ProfilingGene OrderMembrane Transport ProteinsMolecular Sequence DataPhylogenyPlant DiseasesPlantsPromoter Regions, GeneticTranscription FactorsDNA, BacterialMembrane Transport ProteinsTranscription FactorsVirulence Factors

Identifiers

PMID21335458
PMCPMC3133045
OpenAlexW2032961889

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.