Evidence map›Paper›PMID 21330354›Full record

ArticleNucleic acids research2011

Structural insights into the dynamics and function of the C-terminus of the E. coli RNA chaperone Hfq.

Mads Beich-Frandsen, Branislav Vecerek, Petr V Konarev, Björn Sjöblom, Karin Kloiber, Hermann Hämmerle, Lukas Rajkowitsch, Andrew J Miles, Georg Kontaxis, B A Wallace and 4 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed.

  1. Journal of molecular biology · 2026
    Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Intrinsically disordered interaction network in an RNA chaperone revealed by native mass spectrometry.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  7. Article
  8. Unraveling Membrane Perturbations Caused by the Bacterial Riboregulator Hfq.International journal of molecular sciences · 2022
    Article
  9. Article
  10. Article
  11. Pathogens (Basel, Switzerland) · 2019
    Article
  12. Review
  13. Article
  14. The unusual glycine-rich C terminus of theThe Journal of biological chemistry · 2018
    Article
  15. Proteins That Chaperone RNA Regulation.Microbiology spectrum · 2018
    Review
  16. Hfq chaperone brings speed dating to bacterial sRNA.Wiley interdisciplinary reviews. RNA · 2018
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Mads Beich-FrandsenDepartment of Structural and Computational Biology, Max F. Perutz Laboratories, University of Vienna, Campus Vienna Biocenter 5, A-1030 Vienna, Austria.
Branislav Vecerek
Petr V Konarev
Björn Sjöblom
Karin Kloiber
Hermann Hämmerle
Lukas Rajkowitsch
Andrew J Miles
Georg Kontaxis
B A Wallace
Dimitri I Svergun
Robert Konrat
Udo Bläsi
Kristina Djinovic-Carugo

Funding

Biotechnology and Biological Sciences Research Council BB/H01070X/1
6 · The paper itself

Abstract

The hexameric Escherichia coli RNA chaperone Hfq (Hfq(Ec)) is involved in riboregulation of target mRNAs by small trans-encoded RNAs. Hfq proteins of different bacteria comprise an evolutionarily conserved core, whereas the C-terminus is variable in length. Although the structure of the conserved core has been elucidated for several Hfq proteins, no structural information has yet been obtained for the C-terminus. Using bioinformatics, nuclear magnetic resonance spectroscopy, synchrotron radiation circular dichroism (SRCD) spectroscopy and small angle X-ray scattering we provide for the first time insights into the conformation and dynamic properties of the C-terminal extension of Hfq(Ec). These studies indicate that the C-termini are flexible and extend laterally away from the hexameric core, displaying in this way features typical of intrinsically disordered proteins that facilitate intermolecular interactions. We identified a minimal, intrinsically disordered region of the C-terminus supporting the interactions with longer RNA fragments. This minimal region together with rest of the C-terminal extension provides a flexible moiety capable of tethering long and structurally diverse RNA molecules. Furthermore, SRCD spectroscopy supported the hypothesis that RNA fragments exceeding a certain length interact with the C-termini of Hfq(Ec).

Indexed as

Circular DichroismComputational BiologyEscherichia coli ProteinsHost Factor 1 ProteinModels, MolecularNuclear Magnetic Resonance, BiomolecularProtein ConformationRNASequence DeletionEscherichia coli ProteinsHfq protein, E coliHost Factor 1 ProteinRNA

Identifiers

PMID21330354
PMCPMC3113564

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.