Evidence map›Paper›PMID 21328528›Full record

ArticleJournal of experimental zoology. Part B, Molecular and developmental evolution2011

Developmental transcriptome of Aplysia californica.

Andreas Heyland, Zer Vue, Christian R Voolstra, Mónica Medina, Leonid L Moroz

Abstract read
In one paragraph

Article in Journal of experimental zoology. Part B, Molecular and developmental evolution, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed.

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  15. The evolution of ependymin-related proteins.BMC evolutionary biology · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Andreas HeylandIntegrative Biology, University of Guelph, Ontario, Canada. aheyland@ufl.edu
Zer Vue
Christian R Voolstra
Mónica Medina
Leonid L Moroz

Funding

Genomic Approaches to Neuronal Diversity and PlasticityP50HG002806 · NHGRI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI JU, JINGYUE · 2003 to 2007
$13.9M
Genomic Bases of Behavioral Learning: Single Cell ApproachesR01GM097502 · NIGMS · UNIVERSITY OF FLORIDA · PI HAWKINS, ROBERT D, MOROZ, LEONID L · 2011 to 2014
$1.6M
Genomic Dissection of Circuit DynamicsR21RR025699 · NCRR · UNIVERSITY OF FLORIDA · PI BUCHER, DIRK MARTIN, MOROZ, LEONID L · 2009 to 2010
$408k
Spatial Organization of the Genome in Identified Neurons of Memory CircuitsR21DA030118 · NIDA · UNIVERSITY OF FLORIDA · PI MOROZ, LEONID L · 2010 to 2011
$350k
NCRR NIH HHS R21 RR025699NCRR NIH HHS RR025699NHGRI NIH HHS P50 HG002806NHGRI NIH HHS P50HG002806NIDA NIH HHS R21 DA030118NIGMS NIH HHS R01 GM097502NINDS NIH HHS R01NS06076
6 · The paper itself

Abstract

Genome-wide transcriptional changes in development provide important insight into mechanisms underlying growth, differentiation, and patterning. However, such large-scale developmental studies have been limited to a few representatives of Ecdysozoans and Chordates. Here, we characterize transcriptomes of embryonic, larval, and metamorphic development in the marine mollusc Aplysia californica and reveal novel molecular components associated with life history transitions. Specifically, we identify more than 20 signal peptides, putative hormones, and transcription factors in association with early development and metamorphic stages-many of which seem to be evolutionarily conserved elements of signal transduction pathways. We also characterize genes related to biomineralization-a critical process of molluscan development. In summary, our experiment provides the first large-scale survey of gene expression in mollusc development, and complements previous studies on the regulatory mechanisms underlying body plan patterning and the formation of larval and juvenile structures. This study serves as a resource for further functional annotation of transcripts and genes in Aplysia, specifically and molluscs in general. A comparison of the Aplysia developmental transcriptome with similar studies in the zebra fish Danio rerio, the fruit fly Drosophila melanogaster, the nematode Caenorhabditis elegans, and other studies on molluscs suggests an overall highly divergent pattern of gene regulatory mechanisms that are likely a consequence of the different developmental modes of these organisms.

Indexed as

Gene Expression Regulation, DevelopmentalTranscription, GeneticAnimalsAplysiaBody PatterningCluster AnalysisDNAGene Expression ProfilingOligonucleotide Array Sequence AnalysisReproducibility of ResultsReverse Transcriptase Polymerase Chain ReactionSignal TransductionDNA

Identifiers

PMID21328528
PMCPMC4028319

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.