Evidence map›Paper›PMID 21327101›Full record

ArticleNucleus (Austin, Tex.)

It takes two: communication between homologous alleles preserves genomic stability during V(D)J recombination.

Vicky L Brandt, Susannah L Hewitt, Jane A Skok

Open access · hybridAbstract read
In one paragraph

Article in Nucleus (Austin, Tex.). The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. Article
  3. PAR-TERRA directs homologous sex chromosome pairing.Nature structural & molecular biology · 2017
    Article
  4. Assembly and Expression of Shark Ig Genes.Journal of immunology (Baltimore, Md. : 1950) · 2016
    Review
  5. Article
  6. Pairing and anti-pairing: a balancing act in the diploid genome.Current opinion in genetics & development · 2016
    Review
  7. Long-Range Regulation of V(D)J Recombination.Advances in immunology · 2015
    Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Vicky L BrandtDepartment of Pathology, New York University School of Medicine, New York, NY, USA.
Susannah L Hewitt
Jane A Skok
New York University · USUniversity College London · GB

Funding

Role Of Nuclear Organization In Protecting Genome Stability During RecombinationR01GM086852 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI KLUGER, YUVAL, SKOK, JANE AMANDA · 2008 to 2016
$3.8M
NIGMS NIH HHS R01 GM086852
6 · The paper itself

Abstract

Chromosome pairing is involved in X chromosome inactivation, a classic instance of monoallelic gene expression. Antigen receptor genes are also monoallelically expressed ("allelically excluded") by B and T lymphocytes, and we asked whether pairing contributed to the regulation of V(D)J recombination at these loci. We found that homologous immunoglobulin (Ig) alleles pair up during recombination. Homologous Ig pairing is substantially reduced in the absence of the RAG1/RAG2 recombinase, but a transgene expressing an active site RAG1 mutant (which binds but does not cleave DNA) rescues pairing in Rag1(-/-) developing B cells. RAG-mediated cleavage on one allele induces the other allele to relocate to pericentromeric heterochromatin (PCH), likely to ensure that only one allele is cut at a time. This relocation to PCH requires the DNA damage sensor ATM (ataxia telengiectasia mutated). In the absence of ATM, repositioning at PCH is diminished and the incidence of cleavage on both alleles is significantly increased. ATM appears to be activated by the introduction of a double-strand break on one allele to act in trans on the uncleaved allele, repositioning or maintaining it at PCH, to prevent bi-allelic recombination and chromosomal translocations.

Indexed as

AllelesAnimalsAtaxia Telangiectasia Mutated ProteinsCell Cycle ProteinsCell LineChromosomesDNA-Binding ProteinsDNA RepairGenomic InstabilityHistonesHomeodomain ProteinsImmunoglobulinsMiceProtein Serine-Threonine KinasesTumor Suppressor ProteinsV(D)J RecombinationAtaxia Telangiectasia Mutated ProteinsAtm protein, mouseCell Cycle ProteinsDNA-Binding Proteinsgamma-H2AX protein, mouseHistonesHomeodomain ProteinsImmunoglobulinsProtein Serine-Threonine KinasesRAG-1 proteinTumor Suppressor ProteinsV(D)J recombination activating protein 2allelic exclusionATMgenomic stabilityhomologous pairingIghIgkpericentromeric heterochromatinpericentromeric recruitmentRAGV(D)J recombination

Identifiers

PMID21327101
PMCPMC3035125
OpenAlexW1867381568

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.