Evidence map›Paper›PMID 21326911›Full record

ArticleTranscription

B2 RNA represses TFIIH phosphorylation of RNA polymerase II.

Petro Yakovchuk, James A Goodrich, Jennifer F Kugel

Open access · hybridAbstract read
In one paragraph

Article in Transcription. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. lncRNAs in Stress Response.Current topics in microbiology and immunology · 2016
    Review
  6. Review
  7. Review
  8. Long noncoding RNAs as metazoan developmental regulators.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2013
    Review
  9. Article
  10. The intertwining of transposable elements and non-coding RNAs.International journal of molecular sciences · 2013
    Review
  11. Review
  12. Article
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Petro YakovchukDepartment of Chemistry and Biochemistry, University of Colorado, Boulder, USA.
James A Goodrich
Jennifer F Kugel
University of Colorado Boulder · USUniversity of Colorado System · US

Funding

Regulation of RNA polymerase ll by small RNAsR01GM068414 · NIGMS · UNIVERSITY OF COLORADO AT BOULDER · PI GOODRICH, JAMES · 2003 to 2018
$5.1M
NIGMS NIH HHS R01 GM068414NIGMS NIH HHS R01GM068414
6 · The paper itself

Abstract

Mouse B2 RNA represses RNA polymerase II (Pol II) transcription during the cellular heat shock response. B2 RNA binds Pol II, enters complexes at promoters, and keeps the polymerase from engaging the DNA. Here we show that phosphorylation of Ser5 residues in the Pol II carboxy terminal domain (CTD) decreases after heat shock at the promoter of the repressed actin gene in mouse cells, despite the continued presence of Cdk7 and cyclin H. Biochemical assays revealed that B2 RNA, when present with Pol II in promoter-bound complexes, specifically represses CTD phosphorylation by TFIIH.

Indexed as

ActinsAnimalsBinding SitesBlotting, WesternChromatin ImmunoprecipitationCyclin-Dependent KinasesCyclin HHot TemperatureMiceNIH 3T3 CellsPhosphorylationPromoter Regions, GeneticProtein BindingProtein KinasesRNA Polymerase IIRNA, UntranslatedActinscarboxy-terminal domain kinaseCdk7 protein, mouseCyclin-Dependent KinasesCyclin HProtein KinasesRNA Polymerase IIRNA, UntranslatedRpb1 protein, mouseSerineTranscription Factor TFIIHB2 RNAcarboxy terminal domainheat shocknon-coding RNAphosphorylationrepressionRNA polymerase IITFIIHtranscription

Identifiers

PMID21326911
PMCPMC3023648
OpenAlexW2007855416

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.