Evidence map›Paper›PMID 21325549›Full record

ArticleJournal of clinical microbiology2011

Complete genome sequence of a Yersinia enterocolitica "Old World" (3/O:9) strain and comparison with the "New World" (1B/O:8) strain.

Xin Wang, Yang Li, Huaiqi Jing, Yan Ren, Zhemin Zhou, Shaojing Wang, Biao Kan, Jianguo Xu, Lei Wang

Abstract readComparative Study
In one paragraph

Article in Journal of clinical microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
  2. Article
  3. ZoonoticVeterinary sciences · 2025
    Review
  4. Current Challenges inMicroorganisms · 2025
    Review
  5. Type III Secretion inMicrobiology and molecular biology reviews : MMBR · 2023
    Review
  6. Article
  7. Comparative genomic insights intoMicrobial genomics · 2020
    Article
  8. Article
  9. NovelFrontiers in microbiology · 2019
    Article
  10. Article
  11. Article
  12. Comparison of Growth and the Cytokines Induced by PathogenicFrontiers in cellular and infection microbiology · 2017
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Parallel independent evolution of pathogenicity within the genus Yersinia.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Xin WangNational Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, State Key Laboratory for Infectious Disease Prevention and Control, 102206 Beijing, China.
Yang Li
Huaiqi Jing
Yan Ren
Zhemin Zhou
Shaojing Wang
Biao Kan
Jianguo Xu
Lei Wang

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Yersinia enterocolitica is a heterogeneous bacterial species with a wide range of animal reservoirs through which human intestinal illness can be facilitated. In contrast to the epidemiological pattern observed in the United States, infections in China present a pattern similar to those in European countries and Japan, wherein "Old World" strains (biotypes 2 to 5) are prevalent. To gain insights into the evolution of Y. enterocolitica and pathogenic properties toward human hosts, we sequenced the genome of a biotype 3 strain, 105.5R(r) (O:9), obtained from a Chinese patient. Comparative genome sequence analysis with strain 8081 (1B/O:8) revealed new insights into Y. enterocolitica. Both strains have more than 14% specific genes. In strain 105.5R(r), putative virulence factors were found in strain-specific genomic pathogenicity islands that comprised a novel type III secretion system and rtx-like genes. Many of the loci representing ancestral clusters, which are believed to contribute to enteric survival and pathogenesis, are present in strain 105.5R(r) but lost in strain 8081. Insertion elements in 105.5R(r) have a pattern distinct from those in strain 8081 and were exclusively located in a strain-specific region. In summary, our comparative genome analysis indicates that these two strains may have attained their pathogenicity by completely separate evolutionary events, and the 105.5R(r) strain, a representative of the Old World biogroup, lies in a branch of Y. enterocolitica that is distinct from the "New World" 8081 strain.

Indexed as

Base SequenceGenome, BacterialChinaDNA, BacterialGenes, BacterialHumansMembrane Transport ProteinsMolecular Sequence DataSequence Analysis, DNAVirulence FactorsYersinia enterocoliticaYersinia InfectionsDNA, BacterialMembrane Transport ProteinsVirulence Factors

Identifiers

PMID21325549
PMCPMC3122819

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.