Evidence map›Paper›PMID 21324933›Full record

ArticleDisease models & mechanisms2011

Quantification of factors influencing fluorescent protein expression using RMCE to generate an allelic series in the ROSA26 locus in mice.

Sara X Chen, Anna B Osipovich, Alessandro Ustione, Leah A Potter, Susan Hipkens, Rama Gangula, Weiping Yuan, David W Piston, Mark A Magnuson

Open access · goldAbstract read
In one paragraph

Article in Disease models & mechanisms, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
5.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 51 citations in OpenAlex.

  1. TRPV6 channel function is involved in endometrial epithelial cell CaCellular and molecular life sciences : CMLS · 2025
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  8. Targeted Integration of Transgenes at the Mouse Gt(ROSA)26Sor Locus.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
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  12. Article
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  16. Article
  17. Efficiency and Specificity of Gene Deletion in Lung Epithelial Doxycycline-Inducible Cre Mice.American journal of respiratory cell and molecular biology · 2017
    Article
  18. Imaging morphogenesis.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
  19. Optical Barcoding for Single-Clone Tracking to Study Tumor Heterogeneity.Molecular therapy : the journal of the American Society of Gene Therapy · 2017
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Sara X ChenCenter for Stem Cell Biology, Vanderbilt University Medical Center, Nashville, TN 37232-0494, USA.
Anna B Osipovich
Alessandro Ustione
Leah A Potter
Susan Hipkens
Rama Gangula
Weiping Yuan
David W Piston
Mark A Magnuson
Vanderbilt University Medical Center · US

Funding

Coordinating Center for Beta Cell Biology ConsortiumU01DK072473 · NIDDK · VANDERBILT UNIVERSITY · PI MAGNUSON, MARK A · 2005 to 2014
$61.0M
Translational Analysis CoreP30DK058404 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI RICHARD M. PEEK · 2002 to 2026
$29.9M
Vanderbilt Diabetes Research CenterP30DK020593 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI ALVIN C POWERS · 2012 to 2026
$29.3M
Transcriptional networks of pancreas endocrine cell differentiationU19DK042502 · NIDDK · VANDERBILT UNIVERSITY · PI MAGNUSON, MARK A · 2001 to 2010
$21.5M
DYNAMICS OF PANCREATIC ISLET FUNCTIONR01DK053434 · NIDDK · VANDERBILT UNIVERSITY · PI PISTON, DAVID W · 1998 to 2010
$3.1M
Dopamine Action in Pancreatic Islet FunctionR01DK085064 · NIDDK · WASHINGTON UNIVERSITY · PI PISTON, DAVID W · 2010 to 2014
$1.7M
TRANSGENIC MICE COREP01DK042502 · NIDDK · VANDERBILT UNIVERSITY · PI STEIN, ROLAND W · 1990 to 2000
$994k
NIDDK NIH HHS DK042502NIDDK NIH HHS DK53434NIDDK NIH HHS DK58404NIDDK NIH HHS DK85064NIDDK NIH HHS P01 DK042502NIDDK NIH HHS P30 DK020593NIDDK NIH HHS P30 DK058404NIDDK NIH HHS R01 DK053434NIDDK NIH HHS R01 DK085064NIDDK NIH HHS U01 DK072473NIDDK NIH HHS U19 DK042502
6 · The paper itself

Abstract

Fluorescent proteins (FPs) have great utility in identifying specific cell populations and in studying cellular dynamics in the mouse. To quantify the factors that determine both the expression and relative brightness of FPs in mouse embryonic stem cells (mESCs) and in mice, we generated eight different FP-expressing ROSA26 alleles using recombinase-mediated cassette exchange (RMCE). These alleles enabled us to analyze the effects on FP expression of a translational enhancer and different 3'-intronic and/or polyadenylation sequences, as well as the relative brightness of five different FPs, without the confounding position and copy number effects that are typically associated with randomly inserted transgenes. We found that the expression of a given FP can vary threefold or more depending on the genetic features present in the allele. The optimal FP expression cassette contained both a translational enhancer sequence in the 5'-untranslated region (UTR) and an intron-containing rabbit β-globin sequence within the 3'-UTR. The relative expressed brightness of individual FPs varied up to tenfold. Of the five different monomeric FPs tested, Citrine (YFP) was the brightest, followed by Apple, eGFP, Cerulean (CFP) and Cherry. Generation of a line of Cherry-expressing mice showed that there was a 30-fold variation of Cherry expression among different tissues and that there was a punctate expression pattern within cells of all tissues examined. This study should help investigators make better-informed design choices when expressing FPs in mESCs and mice.

Indexed as

AllelesAnimalsChromosomes, Artificial, BacterialEmbryo, MammalianEmbryonic Stem CellsFluorescenceGenetic LociGenetic VectorsLuminescent ProteinsMiceMutagenesis, InsertionalOrgan SpecificityProteinsRabbitsRecombinasesRNA, UntranslatedGt(ROSA)26Sor non-coding RNA, mouseLuminescent ProteinsProteinsRecombinasesRNA, Untranslated

Identifiers

PMID21324933
PMCPMC3124063
OpenAlexW2103624126

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.