ArticleGenome research2011
Sequence-based physical mapping of complex genomes by whole genome profiling.
Article in Genome research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
44 citing papers in PubMed.
- Map-Based Cloning of Apomixis Genes in Dandelion (Taraxacum officinale s.l.).Methods in molecular biology (Clifton, N.J.) · 2026Article
- Are cereal grasses a single genetic system?Nature plants · 2024Article
- A reference genome for pea provides insight into legume genome evolution.Nature genetics · 2019Article
- Development of a Sequence-Based Reference Physical Map of Pea (Frontiers in plant science · 2019Article
- Genomic approaches for studying crop evolution.Genome biology · 2018Review
- A mosaic monoploid reference sequence for the highly complex genome of sugarcane.Nature communications · 2018Article
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- pBACode: a random-barcode-based high-throughput approach for BAC paired-end sequencing and physical clone mapping.Nucleic acids research · 2017Article
- Young inversion with multiple linked QTLs under selection in a hybrid zone.Nature ecology & evolution · 2017Article
- Genome puzzle master (GPM): an integrated pipeline for building and editing pseudomolecules from fragmented sequences.Bioinformatics (Oxford, England) · 2016Article
- Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data.Scientific data · 2016Article
- Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63.Proceedings of the National Academy of Sciences of the United States of America · 2016Article
- Multiplex sequencing of bacterial artificial chromosomes for assembling complex plant genomes.Plant biotechnology journal · 2016Article
- MaGuS: a tool for quality assessment and scaffolding of genome assemblies with Whole Genome Profiling™ Data.BMC bioinformatics · 2016Article
- Article
- Physical mapping of immune-related genes in Yesso scallop (Comparative cytogenetics · 2016Article
- Chromosomal mapping of tandem repeats in the Yesso Scallop, Patinopecten yessoensis (Jay, 1857), utilizing fluorescence in situ hybridization.Comparative cytogenetics · 2016Article
- A high-resolution physical map integrating an anchored chromosome with the BAC physical maps of wheat chromosome 6B.BMC genomics · 2015Article
- High-throughput physical map anchoring via BAC-pool sequencing.BMC plant biology · 2015Article
Corrections and comments
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Authors and funding
12 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We present whole genome profiling (WGP), a novel next-generation sequencing-based physical mapping technology for construction of bacterial artificial chromosome (BAC) contigs of complex genomes, using Arabidopsis thaliana as an example. WGP leverages short read sequences derived from restriction fragments of two-dimensionally pooled BAC clones to generate sequence tags. These sequence tags are assigned to individual BAC clones, followed by assembly of BAC contigs based on shared regions containing identical sequence tags. Following in silico analysis of WGP sequence tags and simulation of a map of Arabidopsis chromosome 4 and maize, a WGP map of Arabidopsis thaliana ecotype Columbia was constructed de novo using a six-genome equivalent BAC library. Validation of the WGP map using the Columbia reference sequence confirmed that 350 BAC contigs (98%) were assembled correctly, spanning 97% of the 102-Mb calculated genome coverage. We demonstrate that WGP maps can also be generated for more complex plant genomes and will serve as excellent scaffolds to anchor genetic linkage maps and integrate whole genome sequence data.
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