Evidence map›Paper›PMID 21321362›Full record

ArticleBlood2011

An embryonic stage-specific enhancer within the murine β-globin locus mediates domain-wide histone hyperacetylation.

George Fromm, Brenda Cadiz-Rivera, Christina de Vries, Michael Getman, Kathleen E McGrath, Paul D Kingsley, Jennifer Fields, Steven Fiering, Michael Bulger

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Review
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  4. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

George FrommDepartment of Pediatrics, University of Rochester Medical Center, Center for Pediatric Biomedical Research, Rochester, NY, USA.
Brenda Cadiz-Rivera
Christina de Vries
Michael Getman
Kathleen E McGrath
Paul D Kingsley
Jennifer Fields
Steven Fiering
Michael Bulger
University of Rochester Medical Center · USDartmouth College · US

Funding

Training in Cellular, Biochemical and Molecular SciencesT32GM068411 · NIGMS · UNIVERSITY OF ROCHESTER · PI MAQUAT, LYNNE E · 2005 to 2019
$3.9M
Function of active chromatin domains in erythropoiesisR01DK070687 · NIDDK · UNIVERSITY OF ROCHESTER · PI BULGER, MICHAEL D · 2007 to 2016
$2.5M
SWITCHING STUDIES IN ENDOGENOUS MOUSE BETA GLOBIN REGIONR01DK054071 · NIDDK · DARTMOUTH COLLEGE · PI FIERING, STEVEN · 1997 to 2006
$1.6M
NIDDK NIH HHS R01 DK054071NIDDK NIH HHS R01 DK070687NIGMS NIH HHS T32 GM068411
6 · The paper itself

Abstract

In mammalian nuclei, a select number of tissue-specific gene loci exhibit broadly distributed patterns of histone modifications, such as histone hyperacetylation, that are normally associated with active gene promoters. Previously, we characterized such hyperacetylated domains within mammalian β-globin gene loci, and determined that within the murine locus, neither the β-globin locus control region nor the gene promoters were required for domain formation. Here, we identify a developmentally specific erythroid enhancer, hypersensitive site-embryonic 1 (HS-E1), located within the embryonic β-globin domain in mouse, which is homologous to a region located downstream of the human embryonic ε-globin gene. This sequence exhibits nuclease hypersensitivity in primitive erythroid cells and acts as an enhancer in gain-of-function assays. Deletion of HS-E1 from the endogenous murine β-globin locus results in significant decrease in the expression of the embryonic β-globin genes and loss of the domain-wide pattern of histone hyperacetylation. The data suggest that HS-E1 is an enhancer that is uniquely required for β-like globin expression in primitive erythroid cells, and that it defines a novel class of enhancer that works in part by domain-wide modulation of chromatin structure.

Indexed as

AcetylationAnimalsbeta-GlobinsChromatin ImmunoprecipitationEmbryo, MammalianEnhancer Elements, GeneticErythroid CellsGene ExpressionGene Expression Regulation, DevelopmentalHistonesMiceReverse Transcriptase Polymerase Chain Reactionbeta-GlobinsHistones

Identifiers

PMID21321362
PMCPMC3109543
OpenAlexW2094269946

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.