Evidence map›Paper›PMID 21321231›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Trypanosome REH1 is an RNA helicase involved with the 3'-5' polarity of multiple gRNA-guided uridine insertion/deletion RNA editing.

Feng Li, Jeremy Herrera, Sharleen Zhou, Dmitri A Maslov, Larry Simpson

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Feng LiDepartment of Microbiology, Immunology and Molecular Genetics, David Geffen School of Medicine, University of California, Los Angeles, CA 90095, USA. fengli@ucla.edu
Jeremy Herrera
Sharleen Zhou
Dmitri A Maslov
Larry Simpson
University of California, Los Angeles · USUniversity of California, Berkeley · USUniversity of California, Riverside · US

Funding

FUNCTION OF THE KINETOPLAST IN THE HEMOFLAGELLATESR01AI009102 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SIMPSON, LARRY · 1985 to 2013
$7.0M
Mitochondrial ribosomes and related RNP complexes in Trypanosoma bruceiR21AI088292 · NIAID · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI MASLOV, DMITRI · 2010 to 2011
$390k
CHITOSOMES AND REGULATED SECRETION IN S CEREVISIAEF32AI009102 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI ZIMAN, MICHAEL · 1994 to 1996
–
FUNCTION OF THE KINETOPLAST IN THE HEMOFLAGELLATESR37AI009102 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SIMPSON, LARRY · 1990 to 1999
–
Howard Hughes Medical InstituteNIAID NIH HHS AI09102NIAID NIH HHS F32 AI009102NIAID NIH HHS R01 AI009102NIAID NIH HHS R21 AI088292NIAID NIH HHS R37 AI009102
6 · The paper itself

Abstract

Uridine insertion/deletion RNA editing in kinetoplastid mitochondria corrects encoded frameshifts in mRNAs. The genetic information for editing resides in small guide RNAs (gRNAs), which form anchor duplexes just downstream of an editing site and mediate editing within a single editing "block." Many mRNAs require multiple gRNAs; the observed overall 3' to 5' polarity of editing is determined by the formation of upstream mRNA anchors by downstream editing. Hel61, a mitochondrial DEAD-box protein, was previously shown to be involved in RNA editing, but the functional role was not clear. Here we report that down-regulation of Hel61 [renamed REH1 (RNA editing helicase 1)] expression in Trypanosoma brucei selectively affects editing mediated by two or more overlapping gRNAs but has no effect on editing within a single block. Down-regulation produces an increased abundance of the gRNA/edited mRNA duplex for the first editing block of the A6 mRNA. Recombinant REH1 has an ATP-dependent double strand RNA unwinding activity in vitro with a model gRNA-mRNA duplex. These data indicate that REH1 is involved in gRNA displacement either directly by unwinding the gRNA/edited mRNA duplex or indirectly, to allow the 5' adjacent upstream gRNA to form an anchor duplex with the edited mRNA to initiate another block of editing. Purified tagged REH1 is associated with the RNA editing core complex by RNA linkers and a colocalization of REH1, REL1, and two kinetoplast ribosomal proteins with the kinetoplast DNA was observed by immunofluorescence, suggesting that editing, transcription, and translation may be functionally linked.

Indexed as

Adenosine TriphosphatasesCarrier ProteinsDown-RegulationINDEL MutationIntracellular SpaceMitochondriaProtein TransportProtozoan ProteinsRecombinant ProteinsRibosomal ProteinsRNA, Double-StrandedRNA EditingRNA, Guide, KinetoplastidaRNA HelicasesRNA InterferenceRNA, MessengerAdenosine TriphosphatasesCarrier ProteinsProtozoan ProteinsRecombinant ProteinsRibosomal ProteinsRNA, Double-StrandedRNA, Guide, KinetoplastidaRNA HelicasesRNA, MessengerRNA, Protozoanstreptavidin-binding peptideUridine

Identifiers

PMID21321231
PMCPMC3048136
OpenAlexW2023514407

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.