Evidence map›Paper›PMID 21318371›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2011

Expression level of a gibberellin 20-oxidase gene is associated with multiple agronomic and quality traits in barley.

Qiaojun Jia, Xiao-Qi Zhang, Sharon Westcott, Sue Broughton, Mehmet Cakir, Jianming Yang, Reg Lance, Chengdao Li

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In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
4.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 74 citations in OpenAlex.

  1. Article
  2. Validation of SNP markers for selection of semi-dwarf and peduncle extrusion in barley.Molecular breeding : new strategies in plant improvement · 2023
    Article
  3. Genetic Localization and Homologous Genes Mining for Barley Grain Size.International journal of molecular sciences · 2023
    Review
  4. Article
  5. Article
  6. Article
  7. The Breeding of Winter-Hardy Malting Barley.Plants (Basel, Switzerland) · 2021
    Review
  8. Major flowering time genes of barley: allelic diversity, effects, and comparison with wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Key Hormonal Components Regulate Agronomically Important Traits in Barley.International journal of molecular sciences · 2018
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Qiaojun JiaInstitute of Crop and Nuclear Technology Utilization, Zhejiang Academy of Agricultural Sciences, Hangzhou, China.
Xiao-Qi Zhang
Sharon Westcott
Sue Broughton
Mehmet Cakir
Jianming Yang
Reg Lance
Chengdao Li
Agriculture and Food · AUGovernment of Western Australia · AUMurdoch University · AUZheJiang Academy of Agricultural Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The use of dwarfing genes has resulted in the most significant improvements in yield and adaptation in cereal crops. The allelic dwarfing gene sdw1/denso has been used throughout the world to develop commercial barley varieties. The sdw1 gene has never been used successfully for malting barley, but only for a large number of feed varieties. One of the gibberellin 20-oxidase genes (Hv20ox₂) was identified as the candidate gene for sdw1/denso. Semi-quantitative real-time RT-PCR revealed that Hv20ox₂ was expressed at different levels in various organs of barley. Transcriptional levels were reduced in leaf blade, sheath, stem and rachis tissue in the barley variety Baudin with the denso gene. Subsequently, the relative expression levels of Hv20ox₂ were determined by quantitative real-time RT-PCR in a doubled haploid population and mapped as a quantitative trait. A single expression quantitative trait locus (eQTL) was identified and mapped to its structural gene region on chromosome 3H. The eQTL was co-located with QTLs for yield, height, development score, hectolitre weight and grain plumpness. The expression level of Hv20ox₂ was reduced fourfold in the denso mutant, but around 60-fold in the sdw1 mutant, compared to the control variety. The reduced expression level of Hv20ox₂ enhanced grain yield by increasing the number of effective tillers, but had negative effects on grain and malting quality. The sdw1 gene can be used only in feed barley due to its severe reduction of Hv20ox₂ expression. The gene expression marker for Hv20ox₂ can be used to distinguish different alleles of sdw1/denso.

Indexed as

PhenotypeAgricultureBreedingDNA PrimersGene Expression ProfilingHordeumLinear ModelsMixed Function OxygenasesQuantitative Trait LociReverse Transcriptase Polymerase Chain ReactionWestern AustraliaDNA Primersgibberellin, 2-oxoglutarate-oxygen oxidoreductase (20-hydroxylating, oxidizing)Mixed Function Oxygenases

Identifiers

PMID21318371
OpenAlexW1993003608

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.