Evidence map›Paper›PMID 21317882›Full record

ArticleNature2011

Crystal structure of a potassium ion transporter, TrkH.

Yu Cao, Xiangshu Jin, Hua Huang, Mehabaw Getahun Derebe, Elena J Levin, Venkataraman Kabaleeswaran, Yaping Pan, Marco Punta, James Love, Jun Weng and 11 more

Abstract read
In one paragraph

Article in Nature, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 132 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Regulation of potassium uptake inJournal of bacteriology · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Inverse regulation of SOS1 and HKT1 protein localization and stability by SOS3/CBL4 inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Dimerisation of the Yeast KInternational journal of molecular sciences · 2022
    Article
  11. Review
  12. Article
  13. A Novel High-Affinity Potassium TransporterPlants (Basel, Switzerland) · 2022
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Unappreciated Roles for KTrends in microbiology · 2021
    Review
  19. Article
  20. Review

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 8 institutions in 2 countries.

Yu CaoDepartment of Physiology & Cellular Biophysics, College of Physicians and Surgeons, Columbia University, 630 West 168th Street, New York, New York 10032, USA.
Xiangshu Jin
Hua Huang
Mehabaw Getahun Derebe
Elena J Levin
Venkataraman Kabaleeswaran
Yaping Pan
Marco Punta
James Love
Jun Weng
Matthias Quick
Sheng Ye
Brian Kloss
Renato Bruni
Erik Martinez-Hackert
Wayne A Hendrickson
Burkhard Rost
Jonathan A Javitch
Kanagalaghatta R Rajashankar
Youxing Jiang
Ming Zhou
Columbia University · USHoward Hughes Medical Institute · USNew York Structural Biology Center · USThe University of Texas Southwestern Medical Center · USArgonne National Laboratory · USInstitute for Advanced Study · DENew York State Psychiatric InstituteTechnical University of Munich · DE

Funding

Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
Structural mechanism of K channel modulation by cellular redox stateR01HL086392 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ZHOU, MING · 2006 to 2018
$3.9M
Structure and function of urea transportersR01DK088057 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ZHOU, MING · 2010 to 2014
$1.7M
Molecular Determinants for the Action of PsychostimulantsK05DA022413 · NIDA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI JAVITCH, JONATHAN A · 2007 to 2016
$1.3M
Howard Hughes Medical InstituteNHLBI NIH HHS HL086392NHLBI NIH HHS R01 HL086392NIBIB NIH HHS P30 EB009998NIDA NIH HHS K05 DA022413NIDDK NIH HHS DK088057NIDDK NIH HHS R01 DK088057NIGMS NIH HHS GM05026NIGMS NIH HHS GM05026-SUB0007
6 · The paper itself

Abstract

The TrkH/TrkG/KtrB proteins mediate K(+) uptake in bacteria and probably evolved from simple K(+) channels by multiple gene duplications or fusions. Here we present the crystal structure of a TrkH from Vibrio parahaemolyticus. TrkH is a homodimer, and each protomer contains an ion permeation pathway. A selectivity filter, similar in architecture to those of K(+) channels but significantly shorter, is lined by backbone and side-chain oxygen atoms. Functional studies showed that TrkH is selective for permeation of K(+) and Rb(+) over smaller ions such as Na(+) or Li(+). Immediately intracellular to the selectivity filter are an intramembrane loop and an arginine residue, both highly conserved, which constrict the permeation pathway. Substituting the arginine with an alanine significantly increases the rate of K(+) flux. These results reveal the molecular basis of K(+) selectivity and suggest a novel gating mechanism for this large and important family of membrane transport proteins.

Indexed as

Amino Acid SequenceATP-Binding Cassette TransportersCrystallography, X-RayEscherichia coli ProteinsIon Channel GatingIon TransportModels, MolecularMolecular Sequence DataPotassiumPotassium ChannelsStructure-Activity RelationshipSubstrate SpecificityVibrio parahaemolyticusATP-Binding Cassette TransportersEscherichia coli ProteinsPotassiumPotassium ChannelsTrkH protein, E coli

Identifiers

PMID21317882
PMCPMC3077569
OpenAlexW2036952012

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.