Evidence map›Paper›PMID 21316766›Full record

ArticleMolecular immunology2011

Signal peptides and trans-membrane regions are broadly immunogenic and have high CD8+ T cell epitope densities: Implications for vaccine development.

Riva Kovjazin, Ilan Volovitz, Yair Daon, Tal Vider-Shalit, Roy Azran, Lea Tsaban, Lior Carmon, Yoram Louzoun

Abstract read
In one paragraph

Article in Molecular immunology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 51 citations in OpenAlex.

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  15. IFN-γ treatment protocol for MHC-IJournal for immunotherapy of cancer · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Riva KovjazinVaxil BioTherapeutics Ltd. 13A, WIS Science Park, Nes-Ziona 74036, Israel.
Ilan Volovitz
Yair Daon
Tal Vider-Shalit
Roy Azran
Lea Tsaban
Lior Carmon
Yoram Louzoun
Bar-Ilan University · ILTel Aviv Sourasky Medical Center · IL

Funding

Bioinformatic analysis of the detailed immune system epitope repertoireR56AI061062 · NIAID · BAR-ILAN UNIVERSITY · PI LOUZOUN, YORAM · 2009 to 2009
$145k
NIAID NIH HHS R56 AI061062
6 · The paper itself

Abstract

Cell mediated immune response has a major role in controlling the elimination of infectious agents. The rational design of sub-unit peptide vaccines against intracellular pathogens or cancer requires the use of antigenic sequence/s that can induce highly potent, long lasting and antigen-specific responses in the majority of the population. A promising peptide selection strategy is the detection of multi-epitope peptide sequences with an ability to bind multiple MHC alleles. While past research sought the best epitopes based on their specific antigenicity, we ask whether specific defined domains have high epitope densities. Signal peptides and trans-membrane domains were found to have exceptionally high epitope densities. The improved MHC binding of these domains relies on their hydrophobic nature and, in signal peptides, also on their specific sequence. The high epitope density of SP was computed using in-silico methods and corroborated by the high percentage of identified SP epitope in the IEDB (immune epitope database). The enhanced immunogenicity of SP was then experimentally confirmed using a panel of nine peptides derived from Mycobacterium tuberculosis (MTb) proteins used in human PBMC proliferation assays and T cell lines functional assays. Our results show the exceptionally high antigen specific response rates and population coverage to SP sequences compared with non-SP peptide antigens derived from the same proteins. The results suggest a novel scheme for the rational design of T cell vaccines using a domain based rather than an epitope based approach.

Indexed as

Protein Sorting SignalsAmino Acid SequenceAnimalsBacterial ProteinsCD8-Positive T-LymphocytesCell ProliferationCells, CulturedEpitopes, T-LymphocyteFlow CytometryHistocompatibility AntigensHumansHydrophobic and Hydrophilic InteractionsMembrane ProteinsMiceMolecular Sequence DataMycobacterium tuberculosisBacterial ProteinsEpitopes, T-LymphocyteHistocompatibility AntigensMembrane ProteinsPeptidesProtein Sorting SignalsVaccines, Subunit

Identifiers

PMID21316766
PMCPMC3056897
OpenAlexW2040681749

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.