Evidence map›Paper›PMID 21314918›Full record

ArticleBMC microbiology2011

Repression of btuB gene transcription in Escherichia coli by the GadX protein.

Guang-Sheng Lei, Wan-Jr Syu, Po-Huang Liang, Kin-Fu Chak, Wensi S Hu, Shiau-Ting Hu

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Guang-Sheng LeiInstitute of Microbiology and Immunology, School of Life Science, National Yang-Ming University, Taipei, Taiwan.
Wan-Jr Syu
Po-Huang Liang
Kin-Fu Chak
Wensi S Hu
Shiau-Ting Hu
National Yang Ming Chiao Tung University · TWNational Yang Ming Chiao Tung University · TWInstitute of Biological Chemistry, Academia Sinica · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundBtuB (B twelve uptake) is an outer membrane protein of Escherichia coli. It serves as a receptor for cobalamines uptake or bactericidal toxin entry. A decrease in the production of the BtuB protein would cause E. coli to become resistant to colicins. The production of BtuB has been shown to be regulated at the post-transcriptional level. The secondary structure of 5' untranslated region of btuB mRNA and the intracellular concentration of adenosylcobalamin (Ado-Cbl) would affect the translational efficiency and RNA stability of btuB gene. The transcriptional regulation of btuB expression is still unclear.

resultsTo determine whether the btuB gene is also transcriptionally controlled by trans-acting factors, a genomic library was screened for clones that enable E. coli to grow in the presence of colicin E7, and a plasmid carrying gadX and gadY genes was isolated. The lacZ reporter gene assay revealed that these two genes decreased the btuB promoter activity by approximately 50%, and the production of the BtuB protein was reduced by approximately 90% in the presence of a plasmid carrying both gadX and gadY genes in E. coli as determined by Western blotting. Results of electrophoretic mobility assay and DNase I footprinting indicated that the GadX protein binds to the 5' untranslated region of the btuB gene. Since gadX and gadY genes are more highly expressed under acidic conditions, the transcriptional level of btuB in cells cultured in pH 7.4 or pH 5.5 medium was examined by quantitative real-time PCR to investigate the effect of GadX. The results showed the transcription of gadX with 1.4-fold increase but the level of btuB was reduced to 57%.

conclusionsThrough biological and biochemical analysis, we have demonstrated the GadX can directly interact with btuB promoter and affect the expression of btuB. In conclusion, this study provides the first evidence that the expression of btuB gene is transcriptionally repressed by the acid responsive genes gadX and gadY.

Indexed as

Gene Expression Regulation, BacterialAnti-Bacterial AgentsAraC Transcription FactorArtificial Gene FusionBacterial Outer Membrane Proteinsbeta-GalactosidaseBlotting, WesternColicinsDNA, BacterialDNA FootprintingDrug Resistance, BacterialElectrophoretic Mobility Shift AssayEscherichia coliEscherichia coli ProteinsGenes, ReporterMembrane Transport ProteinsAnti-Bacterial AgentsAraC Transcription FactorBacterial Outer Membrane Proteinsbeta-GalactosidaseBtuB protein, E coliColicinsDNA, BacterialEscherichia coli ProteinsGadX protein, E coliMembrane Transport ProteinsRepressor Proteins

Identifiers

PMID21314918
PMCPMC3050690
OpenAlexW2123979922

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.