Evidence map›Paper›PMID 21311564›Full record

ArticleCell death and differentiation2011

Genomic instability in induced stem cells.

C E Pasi, A Dereli-Öz, S Negrini, M Friedli, G Fragola, A Lombardo, G Van Houwe, L Naldini, S Casola, G Testa and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell death and differentiation, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed
11.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed, 147 citations in OpenAlex.

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  7. Replication stress causes delayed mitotic entry and chromosome 12 fragility at the ANKS1B large neuronal gene in human induced pluripotent stem cells.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2023
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  19. iPSCs and fibroblast subclones from the same fibroblast population contain comparable levels of sequence variations.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  20. Article

20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

C E PasiDepartment of Experimental Oncology, IFOM-IEO Campus, Istituto Europeo di Oncologia, Milan, Italy.
A Dereli-Öz
S Negrini
M Friedli
G Fragola
A Lombardo
G Van Houwe
L Naldini
S Casola
G Testa
D Trono
P G Pelicci
T D Halazonetis
European Institute of Oncology · ITUniversity of Geneva · CHÉcole Polytechnique Fédérale de Lausanne · CHThe San Raffaele Telethon Institute for Gene Therapy · ITFIRC Institute of Molecular Oncology · IT

Funding

Activation of checkpoint pathways in cancerR01CA118827 · NCI · UNIVERSITY OF GENEVA · PI HALAZONETIS, THANOS D · 2006 to 2009
$750k
NCI NIH HHS R01 CA118827
6 · The paper itself

Abstract

The ability to reprogram adult cells into stem cells has raised hopes for novel therapies for many human diseases. Typical stem cell reprogramming protocols involve expression of a small number of genes in differentiated somatic cells with the c-Myc and Klf4 proto-oncogenes typically included in this mix. We have previously shown that expression of oncogenes leads to DNA replication stress and genomic instability, explaining the high frequency of p53 mutations in human cancers. Consequently, we wondered whether stem cell reprogramming also leads to genomic instability. To test this hypothesis, we examined stem cells induced by a variety of protocols. The first protocol, developed specifically for this study, reprogrammed primary mouse mammary cells into mammary stem cells by expressing c-Myc. Two other previously established protocols reprogrammed mouse embryo fibroblasts into induced pluripotent stem cells by expressing either three genes, Oct4, Sox2 and Klf4, or four genes, OSK plus c-Myc. Comparative genomic hybridization analysis of stem cells derived by these protocols revealed the presence of genomic deletions and amplifications, whose signature was suggestive of oncogene-induced DNA replication stress. The genomic aberrations were to a significant degree dependent on c-Myc expression and their presence could explain why p53 inactivation facilitates stem cell reprogramming.

Indexed as

Genomic InstabilityAdipose TissueAlkaline PhosphataseAnimalsCells, CulturedCell ShapeComparative Genomic HybridizationDNA-Binding ProteinsDNA ReplicationFemaleFibroblast Growth Factor 4HumansInduced Pluripotent Stem CellsKruppel-Like Factor 4Mammary Glands, AnimalMiceAlkaline PhosphataseDNA-Binding ProteinsERas protein, mouseFgf4 protein, mouseFibroblast Growth Factor 4KLF4 protein, humanKlf4 protein, mouseKruppel-Like Factor 4Myc protein, mouseOctamer Transcription Factor-3Oncogene Protein p21(ras)Pou5f1 protein, mouseProto-Oncogene Proteins c-mycRecombinant Fusion Proteinszinc finger protein 296, mouse

Identifiers

PMID21311564
PMCPMC3079512
OpenAlexW2058981318

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.