Evidence map›Paper›PMID 21310745›Full record

ArticleBioinformatics (Oxford, England)2011

GeneReporter--sequence-based document retrieval and annotation.

Annekathrin Bartsch, Boyke Bunk, Isam Haddad, Johannes Klein, Richard Münch, Thorsten Johl, Uwe Kärst, Lothar Jänsch, Dieter Jahn, Ida Retter

Open access · hybridAbstract read
In one paragraph

Article in Bioinformatics (Oxford, England), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 7 citations in OpenAlex.

  1. PubServer: literature searches by homology.Nucleic acids research · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Annekathrin BartschInstitute for Microbiology, Technische Universität Braunschweig, Braunschweig, Germany.
Boyke Bunk
Isam Haddad
Johannes Klein
Richard Münch
Thorsten Johl
Uwe Kärst
Lothar Jänsch
Dieter Jahn
Ida Retter
Helmholtz Centre for Infection Research · DETechnische Universität Braunschweig · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

unlabelledGeneReporter is a web tool that reports functional information and relevant literature on a protein-coding sequence of interest. Its purpose is to support both manual genome annotation and document retrieval. PubMed references corresponding to a sequence are detected by the extraction of query words from UniProt entries of homologous sequences. Data on protein families, domains, potential cofactors, structure, function, cellular localization, metabolic contribution and corresponding DNA binding sites complement the information on a given gene product of interest. AVAILABILITY AND IMPLEMENTATION: GeneReporter is available at http://www.genereporter.tu-bs.de. The web site integrates databases and analysis tools as SOAP-based web services from the EBI (European Bioinformatics Institute) and NCBI (National Center for Biotechnology Information).

Indexed as

Molecular Sequence AnnotationSequence Analysis, ProteinSoftwareComputational BiologyDatabases, GeneticData MiningInternetProteinsPubMedSequence Homology, Amino AcidProteins

Identifiers

PMID21310745
PMCPMC3065684
OpenAlexW2156577442

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.