Evidence map›Paper›PMID 21310160›Full record

ArticleInternational journal for parasitology2011

Construction of a genetic map for Theileria parva: identification of hotspots of recombination.

Frank Katzer, Regina Lizundia, Daniel Ngugi, Damer Blake, Declan McKeever

Open access · hybridAbstract read
In one paragraph

Article in International journal for parasitology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.2field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Article
  3. Molecular detection and characterization of a novel Theileria genotype in Dama GazelleInternational journal for parasitology. Parasites and wildlife · 2023
    Article
  4. Article
  5. Article
  6. Antigenic Diversity inFrontiers in genetics · 2021
    Article
  7. Article
  8. Review
  9. Article
  10. Genomics of apicomplexan parasites.Critical reviews in biochemistry and molecular biology · 2017
    Review
  11. Article
  12. Identification of novel Theileria genotypes from Grant's gazelle.International journal for parasitology. Parasites and wildlife · 2015
    Article
  13. Article
  14. Whole-genome sequencing of Theileria parva strains provides insight into parasite migration and diversification in the African continent.DNA research : an international journal for rapid publication of reports on genes and genomes · 2013
    Article
  15. Review
  16. Article
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Frank KatzerMoredun Research Institute, Pentlands Science Park, Penicuik, Midlothian, UK.
Regina Lizundia
Daniel Ngugi
Damer Blake
Declan McKeever
University of London · GBMoredun Research Institute · GBRoyal Veterinary College · GB

Funding

Wellcome Trust 062610Wellcome Trust 064654
6 · The paper itself

Abstract

The tick-borne protozoan parasite Theileria parva is the causal agent of East Coast Fever (ECF), a severe lymphoproliferative disease of cattle in eastern, central and southern Africa. The life cycle of T. parva is predominantly haploid, with a brief diploid stage occurring in the tick vector that involves meiotic recombination. Resolved genetic studies of T. parva are currently constrained by the lack of a genome-wide high-definition genetic map of the parasite. We undertook a genetic cross of two cloned isolates of T. parva to construct such a map from 35 recombinant progeny, using a genome-wide panel of 79 variable number of tandem repeat markers. Progeny were established by in vitro cloning of cattle lymphocytes after infection with sporozoites prepared from Rhipicephalus appendiculatus ticks fed on a calf undergoing a dual infection with the two clonal parental stocks. The genetic map was determined by assigning individual markers to the four chromosome genome, whose physical length is approximately 8309 kilobasepairs (Kb). Segregation analysis of the markers among the progeny revealed a total genetic size of 1683.8 centiMorgans (cM), covering a physical distance of 7737.62 Kb (∼93% of the genome). The average genome-wide recombination rate observed for T. parva was relatively high, at 0.22 cM Kb(-1) per meiotic generation. Recombination hot-spots and cold-spots were identified for each of the chromosomes. A panel of 27 loci encoding determinants previously identified as immunorelevant or likely to be under selection were positioned on the linkage map. We believe this to be the first genetic linkage map for T. parva. This resource, with the availability of the genome sequence of T. parva, will promote improved understanding of the pathogen by facilitating the use of genetic analysis for identification of loci responsible for variable phenotypic traits exhibited by individual parasite stocks.

Indexed as

Recombination, GeneticAnimalsCattleChromosome MappingCrosses, GeneticDNA, ProtozoanMaleMinisatellite RepeatsRhipicephalusTheileria parvaDNA, Protozoan

Identifiers

PMID21310160
PMCPMC3084458
OpenAlexW2076946641

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.