Evidence map›Paper›PMID 21309872›Full record

ArticleThe Plant journal : for cell and molecular biology2011

A revised mineral nutrient supplement increases biomass and growth rate in Chlamydomonas reinhardtii.

Janette Kropat, Anne Hong-Hermesdorf, David Casero, Petr Ent, Madeli Castruita, Matteo Pellegrini, Sabeeha S Merchant, Davin Malasarn

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 181 papers.

0numbers the graph read from it
0cells of the map it votes in
181citing papers in PubMed
6.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

181 citing papers in PubMed, 363 citations in OpenAlex.

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  9. Artificial Symbiosis for Bulk Production of Bacterial Cellulose Composites.Advanced materials (Deerfield Beach, Fla.) · 2026
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  10. SAGA1 and SAGA2 localize the starch sheath to the pyrenoid inbioRxiv : the preprint server for biology · 2026
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  11. Proceedings of the National Academy of Sciences of the United States of America · 2026
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  12. Single-cell ionomes of terrestrial cryosphere algae.Communications earth & environment · 2026
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  20. Review

121 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Janette KropatDepartment of Chemistry and Biochemistry, University of California, Los Angeles, CA 90095-1569, USA.
Anne Hong-Hermesdorf
David Casero
Petr Ent
Madeli Castruita
Matteo Pellegrini
Sabeeha S Merchant
Davin Malasarn
University of California, Los Angeles · US

Funding

Nutritional Cu Signaling and HomeostasisR01GM042143 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SABEEHA MERCHANT · 1995 to 2026
$4.6M
Nutritional Copper Signaling and HomeostasisR37GM042143 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MERCHANT, SABEEHA · 2011 to 2020
$4.3M
Dissecting the Regulation of Zinc-HomeostasisF32GM083562 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MALASARN, DAVIN · 2008 to 2010
$97k
Genomic Approaches to Divining Mechanisms for Acclimation Cu DefiencyF32GM086006 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CASTRUITA, MADELI · 2008 to 2010
$97k
NIGMS NIH HHS F32 GM083562NIGMS NIH HHS F32 GM086006NIGMS NIH HHS F32GM086006NIGMS NIH HHS R01 GM042143NIGMS NIH HHS R37 GM042143
6 · The paper itself

Abstract

Interest in exploiting algae as a biofuel source and the role of inorganic nutrient deficiency in inducing triacylglyceride (TAG) accumulation in cells necessitates a strategy to efficiently formulate species-specific culture media that can easily be manipulated. Using the reference organism Chlamydomonas reinhardtii, we tested the hypothesis that modeling trace element supplements after the cellular ionome would result in optimized cell growth. We determined the trace metal content of several commonly used Chlamydomonas strains in various culture conditions and developed a revised trace element solution to parallel these measurements. Comparison of cells growing in the revised supplement versus a traditional trace element solution revealed faster growth rates and higher maximum cell densities with the revised recipe. RNA-seq analysis of cultures growing in the traditional versus revised medium suggest that the variation in transcriptomes was smaller than that found between different wild-type strains grown in traditional Hutner's supplement. Visual observation did not reveal defects in cell motility or mating efficiency in the new supplement. Ni²⁺-inducible expression from the CYC6 promoter remained a useful tool, albeit with an increased requirement for Ni²⁺ because of the introduction of an EDTA buffer system in the revised medium. Other advantages include more facile preparation of trace element stock solutions, a reduction in total chemical use, a more consistent batch-to-batch formulation and long-term stability (tested up to 5 years). Under the new growth regime, we analyzed cells growing under different macro- and micronutrient deficiencies. TAG accumulation in N deficiency is comparable in the new medium. Fe and Zn deficiency also induced TAG accumulation, as suggested by Nile Red staining. This approach can be used to efficiently optimize culture conditions for other algal species to improve growth and to assay cell physiology.

Indexed as

BiomassCulture MediaChlamydomonas reinhardtiiGene Expression ProfilingGene Expression Regulation, PlantNickelPromoter Regions, GeneticSequence Analysis, RNATrace ElementsTriglyceridesCulture MediaNickelTrace ElementsTriglycerides

Identifiers

PMID21309872
PMCPMC3101321
OpenAlexW1599232010

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.