ArticleBMC genomics2011
Integration of linkage maps for the Amphidiploid Brassica napus and comparative mapping with Arabidopsis and Brassica rapa.
Article in BMC genomics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
65 citing papers in PubMed, 117 citations in OpenAlex.
- Global transcriptome analysis reveals potential genes associated with genic male sterility of rapeseed (Frontiers in plant science · 2022Article
- Meiosis and beyond - understanding the mechanistic and evolutionary processes shaping the germline genome.Biological reviews of the Cambridge Philosophical Society · 2021Review
- Identification of Chromosomes and Chromosome Rearrangements in Crop Brassicas andFrontiers in plant science · 2020Article
- Engineering Multiple Abiotic Stress Tolerance in Canola,Frontiers in plant science · 2020Review
- Identification of Flower-Specific Promoters through Comparative Transcriptome Analysis inInternational journal of molecular sciences · 2019Article
- Construction of a High-Density Genetic Map and Analysis of Seed-Related Traits Using Specific Length Amplified Fragment Sequencing forFrontiers in plant science · 2019Article
- QTL and Candidate Gene Identification for Silique Length Based on High-Dense Genetic Map inFrontiers in plant science · 2019Article
- Construction of a high-density genetic linkage map and QTL mapping of oleic acid content and three agronomic traits in sunflower (Breeding science · 2018Article
- Highly dense linkage maps from 31 full-sibling families of turbot (Scophthalmus maximus) provide insights into recombination patterns and chromosome rearrangements throughout a newly refined genome assembly.DNA research : an international journal for rapid publication of reports on genes and genomes · 2018Article
- Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.Plant biotechnology journal · 2018Article
- Article
- Genome-Wide Identification and Structural Analysis of bZIP Transcription Factor Genes in Brassica napus.Genes · 2017Article
- Article
- Genetic dissection of seed oil and protein content and identification of networks associated with oil content in Brassica napus.Scientific reports · 2017Article
- Brassica napus DS-3, encoding a DELLA protein, negatively regulates stem elongation through gibberellin signaling pathway.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- A Major Locus for Manganese Tolerance Maps on Chromosome A09 in a Doubled Haploid Population ofFrontiers in plant science · 2017Article
- Mapping X-Disease Phytoplasma Resistance inFrontiers in plant science · 2017Article
- Introducing the Brassica Information Portal: Towards integrating genotypic and phenotypic Brassica crop data.F1000Research · 2017Article
- Extraction of the Constituent Subgenomes of the Natural Allopolyploid Rapeseed (Brassica napus L.).Genetics · 2016Article
- Population Genomic Analysis Reveals Differential Evolutionary Histories and Patterns of Diversity across Subgenomes and Subpopulations of Brassica napus L.Frontiers in plant science · 2016Article
5 more citing papers are in PubMed but not listed here.
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Authors and funding
7 authors at 4 institutions in 5 countries.
Funding
Abstract
backgroundThe large number of genetic linkage maps representing Brassica chromosomes constitute a potential platform for studying crop traits and genome evolution within Brassicaceae. However, the alignment of existing maps remains a major challenge. The integration of these genetic maps will enhance genetic resolution, and provide a means to navigate between sequence-tagged loci, and with contiguous genome sequences as these become available.
resultsWe report the first genome-wide integration of Brassica maps based on an automated pipeline which involved collation of genome-wide genotype data for sequence-tagged markers scored on three extensively used amphidiploid Brassica napus (2n = 38) populations. Representative markers were selected from consolidated maps for each population, and skeleton bin maps were generated. The skeleton maps for the three populations were then combined to generate an integrated map for each LG, comparing two different approaches, one encapsulated in JoinMap and the other in MergeMap. The BnaWAIT_01_2010a integrated genetic map was generated using JoinMap, and includes 5,162 genetic markers mapped onto 2,196 loci, with a total genetic length of 1,792 cM. The map density of one locus every 0.82 cM, corresponding to 515 Kbp, increases by at least three-fold the locus and marker density within the original maps. Within the B. napus integrated map we identified 103 conserved collinearity blocks relative to Arabidopsis, including five previously unreported blocks. The BnaWAIT_01_2010a map was used to investigate the integrity and conservation of order proposed for genome sequence scaffolds generated from the constituent A genome of Brassica rapa.
conclusionsOur results provide a comprehensive genetic integration of the B. napus genome from a range of sources, which we anticipate will provide valuable information for rapeseed and Canola research.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.